Chae010032.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282585.1:49888093-49890949[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 7.1e-06 0.0011 21.0 1.1 1 23 133 155 133 155 0.97 2 9 5.5e-06 0.00085 21.4 0.4 1 23 161 183 161 183 0.99 3 9 3.6e-05 0.0056 18.8 1.6 1 23 189 211 189 211 0.96 4 9 1.8e-06 0.00028 22.9 0.5 1 23 217 239 217 239 0.99 5 9 8.1e-06 0.0012 20.8 5.5 1 23 245 267 245 267 0.99 6 9 4.7e-06 0.00073 21.6 0.2 1 23 273 295 273 295 0.98 7 9 0.00082 0.13 14.5 5.4 2 23 301 322 300 322 0.97 8 9 1.4e-06 0.00021 23.2 1.8 2 23 327 348 326 348 0.96 9 9 2.9e-06 0.00044 22.3 0.7 1 23 353 376 353 376 0.96
Sequence Information
- Coding Sequence
- atgaatGAACTAACTACTGAAAATAACCCTTTTGAACCAGAAATAATCGTGGAATCTACCGATgagacaaaaataaaaatcgaagaaaGCCTTTTGGAATATAATGAATTTGAAGATAAACTACCAGTTGATAATGGAATCGCATGTAATGATTTCTATAGAAACTATGTCAGAAGTAATCTATTGGGGGAAGTAGTATACTATGGTGACACTTTCAAAGCTGAGATGGACTTTACCAACCAAGAAGACACTGAAACTAATAAATACCCTGATGGTAATACAGATCTTGCAGCTCGGTGGAGCAGCATCAAACAATTAGTCGGTTTACAAATTCCAGCTGAAACGAAAGATACAGGCACCGATTCCAATAGCGGGGTTCCTGGAAAAAAACAACATTTTGAGTGCAACTTATGTTCGAAAAAGTTCACCCGAAAAACGAGCTTGATAAGTCATCTGGTgattcacactggtgaaaagcCATTTCAATGCCAAACTTGCTCAGAAAGTTTTCCTTACGCCGCATCATTGCGGAAGCACGTCAGAATTCATTCTGCTGAAAAATCTTTCAGCTGCAACTTCTGCCCAAAAAAATTCTATCGAATGGACAATTTGAGAGTGCACGAGCAACTCCACGCAGCTGAAAAACCGTACCAATGTGACGTTTGCCTTAAAGCATTCCGTCGGAAAGACAGCTTGGTGGATCACACCAGAATCCATACCGGCGATACGAAATTTCAGTGTCATCTGTGTTTCAGAACGTTCACCCAAAAGAGGAGTTTGATGAATCACATAAAAATGCACGAAGGTGATACCCCATTCCAGTGTAATTTATGCCCGAAGGCTTTCATCGATGAGAAATCCCTAGTAAGGCACAGCAGAGTTCACGAAGAGAAGTCGTTAGTGTGCCATGTTTGTATGAAAATTTTCACGCGAAGGAAATGTTTGACGAATCACGTTAGAACGCATATGAAACCTCTCGAGTGCCCAGTGTGTTCGAAAACATTCACAaaacgaaaaaacttgacgAAACACAAGCAAATTCATAACGGTGAACAGTTTTTCTGCGAAGTGTGTCcgaaaagttttactcgcaagGTTAGGTTGACTGCTCATTTGAAAAGTGTGCACGTTTAA
- Protein Sequence
- MNELTTENNPFEPEIIVESTDETKIKIEESLLEYNEFEDKLPVDNGIACNDFYRNYVRSNLLGEVVYYGDTFKAEMDFTNQEDTETNKYPDGNTDLAARWSSIKQLVGLQIPAETKDTGTDSNSGVPGKKQHFECNLCSKKFTRKTSLISHLVIHTGEKPFQCQTCSESFPYAASLRKHVRIHSAEKSFSCNFCPKKFYRMDNLRVHEQLHAAEKPYQCDVCLKAFRRKDSLVDHTRIHTGDTKFQCHLCFRTFTQKRSLMNHIKMHEGDTPFQCNLCPKAFIDEKSLVRHSRVHEEKSLVCHVCMKIFTRRKCLTNHVRTHMKPLECPVCSKTFTKRKNLTKHKQIHNGEQFFCEVCPKSFTRKVRLTAHLKSVHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -