Chae050620.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282599.1:28943325-28947369[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.3e-05 0.0036 19.4 2.7 1 23 595 617 595 617 0.98 2 13 0.0024 0.37 13.0 8.7 1 23 623 645 623 645 0.96 3 13 0.00011 0.017 17.3 8.7 1 23 651 673 651 673 0.97 4 13 0.00025 0.039 16.1 1.0 3 23 681 701 679 701 0.98 5 13 0.00025 0.039 16.1 1.0 3 23 709 729 707 729 0.98 6 13 0.0015 0.23 13.7 5.1 1 23 735 757 735 757 0.95 7 13 7.2e-06 0.0011 21.0 3.5 1 23 763 785 763 785 0.96 8 13 0.0028 0.43 12.8 1.0 2 23 792 814 791 814 0.93 9 13 2.5e-06 0.00039 22.4 1.5 2 23 821 842 820 842 0.97 10 13 0.00043 0.066 15.4 0.3 2 23 849 870 848 870 0.97 11 13 0.00014 0.021 17.0 1.3 2 23 877 898 876 898 0.97 12 13 0.00025 0.038 16.1 6.4 1 23 904 926 904 926 0.99 13 13 4.9e-05 0.0075 18.4 0.5 1 23 932 955 932 955 0.96
Sequence Information
- Coding Sequence
- atggaAGTGTTTGAGAACAGTGAAAACATAAATTTAGACAAGTTTCCCTTCATTTGCCGAATTTGCTTGAGAGGAGGTGATTTGAGATTGTTTGAAGAGGAGGATTATTTGCTAGATGTATTCGAGACAATTACGAAGATTAACgTCCGTTCAACAGTCAACTTTCCCAAAAATATATGCCAGAAATGCATCAAAGTACTAGAAGATATATCATTGTTTATCGATAACTCCAATCATAATGCAGCAAGGTTGGGGAGAAACTTCATGcagaaaaacaatgaaaatgaaCACGTAAAAACAACTGAATGTGGAACGTCTCAAAACCGTGTAATGAAAAGCAAGGAAACCATCGACGAGAATGCAGAAGATTTACGATATTTCAAAGGATTTGAAAGTTGTCGAATTTGTTATTCAACAAATATCCTAAAACCGGTCGAAGAGATAGCACATTTGATGCAGCTTTTTCATAATATTACAAACATTGATGTGCGAGCAGAATCCAAATCGAAAGGACACAACATGTGCAACAAATGTATTGATGAACTAGAAAATATATCACTATTCCTTACTTTATCTGTGTGTAATGACATGAAACTcaaaaatgccaaaaaaatgGAATGTTTGAAAACTGAACACTGTTTAGAAAAAAATACGAGTGTTGTCAGTTCTTCAAAGctcaataatataaaatttgaaagtatttcaaacaGAAATGAAGTAAAAGAggagaattattattatgaacaagcATGTTTTTATGAAAGTAAGGATTTACATACAGCTGTTGATATCAAGGAAGATATTTACAGCTCTGAAGCATCTGTAAGAGAAACCTATCGAACTGGGTTGGAGTTCTGTAGTACAAGCAACTCTGTAGAAAAGCCAACAGAGTATGATCCAGTAAGTAAGGATTTACATACAGCTGTTGATATCAAGGAAGATATTTACAGCTCTGAAGCATCTGTAAGAGAAACCTATCGAACTGGGTTGGAGTTCTGTAGTAGAACCAACTCTGTAGAAAAGCCAACAGAGTATGATCCATTAAGTAAGGATTTACATACAGCTGTTGATATCAAGGAAGATATTTACAGCTCTGAAGCATCTGTAAGAGAAACCTATCGAACTGGGTTGGAGTTCTGTAGTAGAACCAACTCTGTAGAAAAGCCAACAGAGTATGATCCATCAAGTAAGGATTTACATACAGCTGTTGATATCAAGGAAGATATTTACAGCTCTGAAGCATCTGTAAGAGAAACCTATCGAACTGGGTTGGAGTTCTGTAGTAGAACCAACTCTGTAGAAAAGCCAACAGAGTATGATCCATTAAGTAAGGATTTACATACAGCTGTTGATATCAAGGAAGATATTTACAGCTCTGAAGCATCTGTAAGAGAAACCTATCGAACTGGGTTGGAGTTCTGTAGTACAAGCAACTCTGTAGAAAAGCCATCAGAGTGTGATCTATGCAGAAATTCCTTTGGTACTGAGATCCACcaaaacattatttcaaaacaattgGTGGTCAGGCTGACATTTGAAGCTATTTCAAACAGAAATGAATTAAAAGAGAATTACGAAAGTAAGGATTTACATACAGCTGTTGATAACAGCTCTGAAGCATCTGTAACAGAAGACTATCGAACTGGGTTGGAGTTTGGTAGTACAAGCAACTCTGTAGAAAAGCCATCAGAGTGCAGAAGTTCCTTTGGTACTGAGAACCACCAAACCattatttcaaaacaattgGTAGTTAGGCTGAAAGTCAACTATGGAATGAAGCaatttaaatgtaatttttgcaaGGAAAGTTTCACTCAAAATGACAAATTGCAACAGCATTTGCTCAATCATTCTGAAGAAAAATCACACAAATGTGGCTGTTGCGGAAAAAGCTTCCATAAAAGGAGTTTATTGAAAAGGCATATGCTCACTCACACTGGTGAGAAACCTTTCACATGTGATTGCTgcaaaaaaagttttactcgaaaaacccATTTACAGAGGCATATGCTCACTCACACTGGAAAAAAACCTTTCGGATGtgatatttgcaaaaatagCTTCGCTAATAGAAGTCGTTTGAAAATGCATATGCTCACTCACACTGGAAAAAAACCTTTCGGATGTGATATTTGCAAGAATAGCTTCGCTAATAGAAGTCGTTTGAAAATGCATATGCTCACTCACACTGGGGAAAAGTCTTTCAATTGTGATTGCTGCAAAAAAAGTTTCGGCCGGAAATCCACTTTACGAGTGCATATGTTCACTCACACTGCAGGCAAACCTTTTATATGTCATGTTTGCAAGAAAAGTTTCAGACAGGAGACTTCTTTGCAGCGGCATATGAtctttcatatggaaaaaaagccGTTGAGTTGTGAGAGATGCAAAAAAGACTTTACCAATAAGGCGCGTTTGAAATATCATATTCTGGCCACTCACAGTTCAGAAACATCACTCGAATGTGATCGCTGTAAAAAAAGTTTCACTCAAAAGATCAATTTAAAGCAACATATCCTCACTCACTCTGGACGAAAACATGTCAGATGTGAAGTTTGCAAGAGAAGCTTATCTAATATAAGCACTTTAAAATTGCATATGCTTATTCACACTGGAGAAAAAACTGTCAGATGCGATTTATGCGAGAAAAGCTTTTATGATAAGAATCGATTGAAAATACATATGTTCACACACACCGGAGAAAAACCTTTCAAATGTGATTCCTGCGAAAAGAGTTTTCCCCGAAATTGCACTTTGCAGCGGCATTTGCACACCCACACTGGAAAAAAACCTTACAGATGTGATAGTTGCGAGAAGGGCTTCTCTGACAAGCGGTATTTGAAATCTCATTTAATCATCGCTCACAGCTGA
- Protein Sequence
- MEVFENSENINLDKFPFICRICLRGGDLRLFEEEDYLLDVFETITKINVRSTVNFPKNICQKCIKVLEDISLFIDNSNHNAARLGRNFMQKNNENEHVKTTECGTSQNRVMKSKETIDENAEDLRYFKGFESCRICYSTNILKPVEEIAHLMQLFHNITNIDVRAESKSKGHNMCNKCIDELENISLFLTLSVCNDMKLKNAKKMECLKTEHCLEKNTSVVSSSKLNNIKFESISNRNEVKEENYYYEQACFYESKDLHTAVDIKEDIYSSEASVRETYRTGLEFCSTSNSVEKPTEYDPVSKDLHTAVDIKEDIYSSEASVRETYRTGLEFCSRTNSVEKPTEYDPLSKDLHTAVDIKEDIYSSEASVRETYRTGLEFCSRTNSVEKPTEYDPSSKDLHTAVDIKEDIYSSEASVRETYRTGLEFCSRTNSVEKPTEYDPLSKDLHTAVDIKEDIYSSEASVRETYRTGLEFCSTSNSVEKPSECDLCRNSFGTEIHQNIISKQLVVRLTFEAISNRNELKENYESKDLHTAVDNSSEASVTEDYRTGLEFGSTSNSVEKPSECRSSFGTENHQTIISKQLVVRLKVNYGMKQFKCNFCKESFTQNDKLQQHLLNHSEEKSHKCGCCGKSFHKRSLLKRHMLTHTGEKPFTCDCCKKSFTRKTHLQRHMLTHTGKKPFGCDICKNSFANRSRLKMHMLTHTGKKPFGCDICKNSFANRSRLKMHMLTHTGEKSFNCDCCKKSFGRKSTLRVHMFTHTAGKPFICHVCKKSFRQETSLQRHMIFHMEKKPLSCERCKKDFTNKARLKYHILATHSSETSLECDRCKKSFTQKINLKQHILTHSGRKHVRCEVCKRSLSNISTLKLHMLIHTGEKTVRCDLCEKSFYDKNRLKIHMFTHTGEKPFKCDSCEKSFPRNCTLQRHLHTHTGKKPYRCDSCEKGFSDKRYLKSHLIIAHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -