Chae020048.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysolina haemoptera
Gene Symbol
-
Assembly
GCA_958298965.1
Location
OY282588.1:32051001-32058934[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0046 0.7 12.2 0.8 1 23 201 223 201 223 0.98
2 16 0.15 22 7.4 0.5 2 23 229 250 229 250 0.97
3 16 0.001 0.16 14.2 5.6 1 21 256 276 256 278 0.95
4 16 8.5e-07 0.00013 23.9 1.4 1 23 284 306 284 306 0.98
5 16 0.0056 0.87 11.9 1.2 1 23 313 335 313 335 0.96
6 16 0.028 4.4 9.7 1.6 2 23 342 363 341 363 0.96
7 16 0.00047 0.071 15.3 0.6 1 23 368 391 368 391 0.97
8 16 0.00038 0.059 15.6 1.5 3 23 396 416 395 416 0.97
9 16 9e-05 0.014 17.5 0.6 2 23 423 445 422 445 0.96
10 16 1.7e-06 0.00026 23.0 1.9 2 23 453 474 452 474 0.98
11 16 0.00017 0.026 16.7 2.9 1 23 478 500 478 500 0.96
12 16 6.4e-07 9.8e-05 24.3 3.9 1 23 506 528 506 528 0.98
13 16 0.0078 1.2 11.4 3.2 1 23 534 556 534 556 0.97
14 16 0.0002 0.03 16.5 2.7 1 23 562 584 562 584 0.99
15 16 0.00043 0.066 15.4 3.6 1 21 590 610 590 614 0.91
16 16 0.0022 0.34 13.2 0.7 1 23 622 645 622 645 0.88

Sequence Information

Coding Sequence
ATGGAGATTGAGAATTCTAATCCAAAAACATTAACGGGAGTGTTTGGtatatctgaatttttttgtgtagaaataaaaaaagagcCAACACTAGAGCACCCGAATACCTCCAAACCAAAACTTCCTGATGATGTTTGTTCTGTTCACCCTAAGACAGAAATAATAAAGCAGgagtttgaaaatgaaagtcAAAATTTACCAGAATTGAAGTATTTGATAAATGATGATGAACTTAAGTCTAAAGAAAATGGGATAATAAAGGCAGAATTTCACACTGACTTTTCTACAAACATCACCAACAACTCAATTAGTCATTGCAATTCAGGCGAAGCAAGTTTTAATGTAGGACTGACGACAGAATGTAAAGATGAGCCTAGCAGTACTATTAGTCAACCACATTTATTTAGTTATGGGAATTTATGTGGGACTAGAAATACTGTTCCAGAATTTGAGTGTTTGTTAGTCAAAGAGGAGGATGACAACCAGGAAGAACTTTGTGAGAAATATGAGTtggatattcaaaatgaaattcaaaagtgtAACAATGAAGACGAGAAAGCCAATAGTGTTCAGACAATTCTGCAAAATAATACAACCACCTACAAGTGCCAGATGTGTGATGCTGTGTTCGCTAAATTTCCTgaatataaaattcataaaaaaaaccattttatggAAAAACGAAGgtGTAATATTTGCAATATCACCCTTCAAAGCATTGGAAAGTTGCGTGATCATTTGTACAAACACCTGAACATGAAACCGTTTAGTTGTGAAGAATGCGGTAAACCATTTATATCCAAACACCATGTAAAGCTGCATCAGAGATGTCACAATACCGAAAAAACATTTCAGTGTACAAAATGTGAGAAAGCATTCAGAAACAAAGGATCTTTGAGAAGCCATCAACTGGTTCATGTGGAGAGAGTTCAGGAATTCATATGTAAAGTATGTAGCGAAGATTGTAAAAACTTGCCTGATTTCCGAAAGCACATGGAAGCACATGGCAAAAAATCCGAAATAAAATGCGGACTCTGTAATAAAACCTTTAATAGTGATAGAGGTTTGGAGTGTCATATAAGTACTCATAAAGAACTGAAATTCCCTTGTGAGTACTGCGGAAAAATATATCCTTCAATGTATAGAATCAAAAGGCACATCAAGAGATCCCATATTCCAAATCACTGTGAAGAATGTACAGAGGTATTTTACGATAGAGCTCAGTACACTAAACATATCAAGCAACACAATGCCAACAAGATCTCTGAATGTGAATACTGCCAGAAACAATTCGACAAAGCCAAGAACTTGAGTGAACACATCAGGCTTCAACACAAACAAGATGGAGAAAAAAAGAAGTGCCATATTTGTGGAAAAGAATTTATAAACAATGCTTTGCTGAAGAACCATGTCAAAACTCATGACAAATGTTTTAAATGTGCTCATTGTGATAGGCTTTTTTCTTCAAGATATAATCTCGAGACACATTCGGTGACACATTCGGGTGCCAGAAACCACAAATGTAGTGTCTGTCAGAAAAGTTATAGCACGAAAAGTAGTTTGAAGAATCATATGGCAACTCACAGTGAAGAAAGATTGTTTCAGTGTGATCGTTGTGCAAAGACCTTCAAGACTAATCGTAGGCTCTATGTCCACAAAACTTCTCATGCCACCGAGGAAAAATACCAATGTGAAATCTGTCTTCAGAAATTCAGggtTAAGCAATACCTCAAATACCACATGAACAAACATTCCAATAACAAACCGTTCGAGTGCACGATTTGTAAAAAACGTTTCAAgcacaaaaaatccaaagaaaAGCACATGGTTATAGGCAAACACAAATACAAGGAAGATAACGAGCATGACTGTGATTTCTGCGATGAAACTTTCAGCTCCAGAGACTTACTACTAGATCATTTCTCTGCTGTCCATCACGAGGAAAACGTCATCAACAGTATAAATGATTGTCAAGAAGATAATGTTGATGCAGATGAAAGTAAGGATACTGTAGAAATCGATGGACTCATTGATATTAAGGAGGAATGTAACGTTGCAGCTTGTAGAAGTGATGAAATGGATGTTGAAACGAAACATATGGTTGATTTTGTTCTTGATCAGATTTAA
Protein Sequence
MEIENSNPKTLTGVFGISEFFCVEIKKEPTLEHPNTSKPKLPDDVCSVHPKTEIIKQEFENESQNLPELKYLINDDELKSKENGIIKAEFHTDFSTNITNNSISHCNSGEASFNVGLTTECKDEPSSTISQPHLFSYGNLCGTRNTVPEFECLLVKEEDDNQEELCEKYELDIQNEIQKCNNEDEKANSVQTILQNNTTTYKCQMCDAVFAKFPEYKIHKKNHFMEKRRCNICNITLQSIGKLRDHLYKHLNMKPFSCEECGKPFISKHHVKLHQRCHNTEKTFQCTKCEKAFRNKGSLRSHQLVHVERVQEFICKVCSEDCKNLPDFRKHMEAHGKKSEIKCGLCNKTFNSDRGLECHISTHKELKFPCEYCGKIYPSMYRIKRHIKRSHIPNHCEECTEVFYDRAQYTKHIKQHNANKISECEYCQKQFDKAKNLSEHIRLQHKQDGEKKKCHICGKEFINNALLKNHVKTHDKCFKCAHCDRLFSSRYNLETHSVTHSGARNHKCSVCQKSYSTKSSLKNHMATHSEERLFQCDRCAKTFKTNRRLYVHKTSHATEEKYQCEICLQKFRVKQYLKYHMNKHSNNKPFECTICKKRFKHKKSKEKHMVIGKHKYKEDNEHDCDFCDETFSSRDLLLDHFSAVHHEENVINSINDCQEDNVDADESKDTVEIDGLIDIKEECNVAACRSDEMDVETKHMVDFVLDQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00328456;
90% Identity
-
80% Identity
-