Chae039439.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282595.1:763782-767290[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.2e-05 0.008 18.3 6.9 1 23 101 123 101 123 0.98 2 15 2.6e-05 0.0039 19.3 5.4 1 23 129 151 129 151 0.99 3 15 0.002 0.3 13.3 6.2 1 23 157 179 157 179 0.98 4 15 5.2e-06 0.00079 21.4 3.8 1 23 187 209 187 209 0.98 5 15 0.54 82 5.7 0.4 1 23 215 237 215 237 0.95 6 15 8.4e-05 0.013 17.6 0.8 1 23 243 265 243 265 0.97 7 15 0.0087 1.3 11.3 0.7 1 23 270 292 270 292 0.98 8 15 0.001 0.15 14.2 2.6 1 23 298 320 298 320 0.97 9 15 0.0084 1.3 11.3 11.0 1 23 326 348 326 348 0.98 10 15 5.6e-05 0.0085 18.2 0.8 1 23 354 376 354 376 0.98 11 15 9.7e-06 0.0015 20.6 0.6 1 23 382 404 382 404 0.97 12 15 5.9e-05 0.009 18.1 0.7 1 23 410 432 410 432 0.98 13 15 1.6e-05 0.0025 19.9 1.9 1 23 438 460 438 460 0.99 14 15 0.00016 0.025 16.7 3.8 1 23 465 487 465 487 0.98 15 15 6e-06 0.00092 21.2 4.4 1 23 492 514 492 514 0.99
Sequence Information
- Coding Sequence
- ATGAAAGAGGAAGACATCTCCAATATACCTGGTGAATGTTCAATGAATACTGTTCATTGTAAAGAAGAGGAAAAGGATGGTGATGATACTGTCAATACTGTTTTTGTCGAGGTTGGAGACAGCTTTGGCAAAGAAGAGCCAAGTGATCATGACCCCTTAGAAACTGAGGCTGAAGAAGATCCTCTAGACATGAAGTCATATTCTTTTGATGGACCGGAAACAGaTTCCCAAAAACAACCCACGAATTCTACAAATGATGAATTCCAAGTGCATCCGAAGGttcatactgaagaaaaaccctTCAAGTGCGACCACTGTTCAAAGACTTATACTCACAAACGAACATTAGAGGATCATATGAAACttcatactgaaaaaaaaacgttcaaGTGCGACCACTGTTCAAAGACTTATACTTACAAACGTAGTTTGGAGTATCATATGAAAAttcatactgaagaaaaatcGTTCAAGTGCTACCACTGTTCAAAGACTTATACTCAAAAACGTAGTTTGGAGTTTCATATGAAAATTCATACTGGTGAAAAGCTAACTGTTTATAGGTGCAAACTCTGTTCAAAATCTTATAACCAAAATAGTAGTTTGCGGAAACATCTGTATACCCATAATGCAGAAAAGCGATTCAAGTGCGAATTCTGTTCCAATGCCTATTTGTATATTTCGGAATTGAAAAGGCATGAAATAATTCATACCGGGAACAAACCTTTCGAGTGCAAATTCTGTTCGAAAGCATTCAATGATATTTCTGCTTTCAAAAGGCACGAAATGATCCATTCGGAACAACAATTCAAATGTTCATTCTGTTCACTGTCTTTTCCCACAGATGCCAATAGGTTGGCACATGAGAGGCGCCATACAGGTGAAAAACCTTTCAAGTGCAAAGTCTGTTCATTATCGTTTTCTTTAAAGATCTATTTGacaagacacgaaaagtttCATTTCGGAAAGAAACGGTTCAAGTGCGAAATTTGCCACAAATCGTTCTTTTTCGCTTGTCATTTAAAGTTGCATCAGTGtgttcatactggagaaaaacttttcaaatgCAAACTCTGCCCGAAATCATATTCTTTCAATAATCAGTTGGTGGTGCACGAAAGGggtcatactggagaaaaaccctTCAAATGCGACATTTGTTCAAAAGCGTTCACTGCAAATTCTGCTTTGAATAAGCATAAAATGTTGCATTCAGGAGATACACCGTTCAAGTGCTCATTTTGTTCAAAGACTTTCGTACGTAGTATCCAATTGGCGGACCATGAAAACATCCATACTGGAAAAAAACCATACGTTTGCAAACTATGCCCAACCTCGTATTCCTCGCATTCCAATTTAATTGGGCATAAGAGAACCCATTTGAATCGATCATTTCATTGCAAATTCTGCGGAAAATCTTTTGCTGAAAGTAACTTTTTGGAAAAGCATGAGAAAACCCACAAAAAGGGAGCATATCGTTGCACAATCTGTAGGAAAGGTTTCGCCAGAAAATGTAATTTGAGAAATCACGAGAGAACTCATATTAAAATGAAAGCGTCTATGCAAGAACTACTGCCTTCGGAAGAGTTCGTCAAAAATGACGATACAGAAGATTTTTCAGTGTGCGACGACTCAAAAGAGTTCACAATGGGTGATGACACAATAGATTACTCAAAGACTGAAGATACGAAAGAGTTTGTTCTCTGCGATGGAAAAAAAGTGTTTGTAAAGGAGGACGGTACAGAGAAGTACATCATGAATGATGACGAGAAAGATTTCATAATATTTAATGAGACAGGAGATTATCCCTTCGGTGAAAACAAATAA
- Protein Sequence
- MKEEDISNIPGECSMNTVHCKEEEKDGDDTVNTVFVEVGDSFGKEEPSDHDPLETEAEEDPLDMKSYSFDGPETDSQKQPTNSTNDEFQVHPKVHTEEKPFKCDHCSKTYTHKRTLEDHMKLHTEKKTFKCDHCSKTYTYKRSLEYHMKIHTEEKSFKCYHCSKTYTQKRSLEFHMKIHTGEKLTVYRCKLCSKSYNQNSSLRKHLYTHNAEKRFKCEFCSNAYLYISELKRHEIIHTGNKPFECKFCSKAFNDISAFKRHEMIHSEQQFKCSFCSLSFPTDANRLAHERRHTGEKPFKCKVCSLSFSLKIYLTRHEKFHFGKKRFKCEICHKSFFFACHLKLHQCVHTGEKLFKCKLCPKSYSFNNQLVVHERGHTGEKPFKCDICSKAFTANSALNKHKMLHSGDTPFKCSFCSKTFVRSIQLADHENIHTGKKPYVCKLCPTSYSSHSNLIGHKRTHLNRSFHCKFCGKSFAESNFLEKHEKTHKKGAYRCTICRKGFARKCNLRNHERTHIKMKASMQELLPSEEFVKNDDTEDFSVCDDSKEFTMGDDTIDYSKTEDTKEFVLCDGKKVFVKEDGTEKYIMNDDEKDFIIFNETGDYPFGENK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -