Chae036357.3
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282593.1:28446056-28448545[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0009 0.14 14.4 0.7 1 23 306 328 306 328 0.98 2 15 9.4e-06 0.0014 20.6 2.8 1 23 334 356 334 356 0.98 3 15 3.9e-06 0.00059 21.8 1.4 1 19 362 380 362 384 0.95 4 15 0.0002 0.03 16.5 3.3 1 23 390 412 390 412 0.97 5 15 0.024 3.6 9.9 0.7 8 23 419 434 418 434 0.96 6 15 0.0037 0.57 12.5 0.8 1 23 440 462 440 462 0.98 7 15 2.9e-06 0.00045 22.2 5.3 1 23 468 490 468 490 0.97 8 15 1e-05 0.0016 20.5 5.0 1 23 496 518 496 518 0.98 9 15 0.092 14 8.1 4.1 1 21 524 544 524 545 0.92 10 15 1.2e-06 0.00018 23.4 2.1 1 23 551 573 551 573 0.98 11 15 0.00068 0.1 14.8 0.4 2 23 580 602 579 602 0.91 12 15 0.0059 0.91 11.8 6.6 1 23 608 630 608 630 0.95 13 15 7.1e-06 0.0011 21.0 2.8 1 23 636 658 636 658 0.98 14 15 0.00088 0.14 14.4 5.2 1 23 664 686 664 686 0.94 15 15 5.6e-07 8.5e-05 24.5 3.4 1 23 692 714 692 714 0.97
Sequence Information
- Coding Sequence
- atggACGTGATAGAGTATGACAAGGAATCAACTATAACATTACGAGATTTTCCGTTTATTTGCCGCATTTGTTGTTTAATGCAAAATGATTTGGTATTGATTGAAGATTATATGTTGGATCTCTTTCAGGCCACCTGCAATATTGATgtCCGATCAAGAGATGAATATCCGAGAACTATATGCAAAGGATGCATCAATGAGTTGGAAGATATATCATTGTTCATTAGTATTTCAAAGTATAATGACACAAATGTTGATACAAACATAAAACTAGAAAAAGAATTCACTGAATGCACAGATTCTCTTGAAAATGGAATGTCGCGAGAGTCTCTAGGAATAACTCATGAGAACGAAGAGGAAATGTGTCTCCAAGAATCTTCATTTTGTCGAATTTGTTTTTCTCCAGCAAGTAGCCTAACACCGCTTGAAAAGAAGTTACATCTAATGCAGCTATtccaaaaaatcacaaatattgATGTGACAATTGAATCCAACTCAGAAAGGCATAGCATATGCAAAAAATGCAGTGACCAACTAGAAAAGATAGCATCGTTCATAAGTTCATCATTGTATAACAATCAAAAACTCGAAAATGCCattggtatgaatgaaactatGAAAACCAAATATCATTCAAGTACAACTGATTTTGAGACATCTACTTGCCCAGAATTCAAACTTGTAAATGTCATTgatagaaaaaatacatttgtgCTTCAAAGTGTGGATAAATCCGAGAACTTTGATATCAAGGAAGAAATTATAGATGACTCACTTGCAACTTCTTctgaacaaaaatacaaaaaccaATTGAATATCCATTCTCAAACCAGTCCCGGAGAAACCCCATTTGAGGGTTCCTCAATCACAGAAACGTTAGAAGAGCAGCCACAGTTACCACTGCAAGAAAAGCAATTCAAATGTGATATCTGTGAAAAAAGTTACAGGTGGAAATTTGATTGGCAAAGGCATTTGCTTGTTCACACTGGAGAAAAGCCGTTCGAATGTGATagctgtgaaaaaaaattcgcTCAAAAGTCTTTTTTGAAACGTCATATGTTCACTCACGTTcaagaaaaacaattcaaatgtGATGTGTGCAAAAAAAGTTTCTCGCGGAAAGCTGATTTGCGAAGACATTTCCCCATTCATTCTGGAGACAAGCCGTTCAAATGTGATGTCTGCAAAAAAAGTTTTGCTCTGAAATCGCGTTTAAAACGGCATTCGTTCACTCACGTTCaagaaaaaccattcaaaagtttTGCTCAGAAGTCGACATTGCAAAAGCATTTGGTCACTCACATTCGGGAAAAACTATTCAAGTGTGATAGCTGCGAAAAAAGTTACAAGTGGGAAAATGATTTGCGAAAGCATCTGCTCATTCACActgaaaaaaagttgttcaaaTGTGATGTCTGCGAAAAAAGTTTCACTCGGAAGTCGCATTTCAACCGGCATTTGCTCTTTCACACTGGAGAAAAACGATTCAAATGTAATATCTGCGAAAAACGTTACACACTGAGCTCGCATTTAAAACGGCATATGTTCTCTCACCTTCaagaaaaaccattcaaatgtgtttgttgcaaaaaaagttttactctGATGTCGCAGTTAAAACGGCATACCTCTCGAGCTCaagaaaaaccattcaaatgtGATTCTTGCACAAAAAGTTTCACGTACAAAAGTGAACTGCAAAGACATTTGCTCATTCACGCCggagaaaaatcattaaaatgtGATGGCTGCGGGAAAATTTTCGCGCGAAAAATTGATCAGCAAAGACATTTTTTGCTCAATCACACCGAAGAAAAGCCGTTCAAATGTGATTGCTGCGAAAAAAGTTACAAACTCAAGTCGAATTTAAAACGGCATATGTTCTTTCACTCTCAAGAAAAACCCTATAAATGTTATAGTTGCGAAAAAAGTTTCACGAGGAAATTTGATTTGCAAAAACATTTGCTTATTCACTCTGGAGAAAAGGCATTCAACTGTAATAGCTGCGAGAAAAGTTTCACTATGAAATCGCATTTGAAAcagcattttttcattcatactggtgaaaaaccattcagATGCGAAATCTGCCAAAAAAGTTTCACTCGGAAGACGCATTTAAATCGGCATTTGGTAATTCATACTAAAGAAAACCCATTTAAATGTGATAGCtgctaa
- Protein Sequence
- MDVIEYDKESTITLRDFPFICRICCLMQNDLVLIEDYMLDLFQATCNIDVRSRDEYPRTICKGCINELEDISLFISISKYNDTNVDTNIKLEKEFTECTDSLENGMSRESLGITHENEEEMCLQESSFCRICFSPASSLTPLEKKLHLMQLFQKITNIDVTIESNSERHSICKKCSDQLEKIASFISSSLYNNQKLENAIGMNETMKTKYHSSTTDFETSTCPEFKLVNVIDRKNTFVLQSVDKSENFDIKEEIIDDSLATSSEQKYKNQLNIHSQTSPGETPFEGSSITETLEEQPQLPLQEKQFKCDICEKSYRWKFDWQRHLLVHTGEKPFECDSCEKKFAQKSFLKRHMFTHVQEKQFKCDVCKKSFSRKADLRRHFPIHSGDKPFKCDVCKKSFALKSRLKRHSFTHVQEKPFKSFAQKSTLQKHLVTHIREKLFKCDSCEKSYKWENDLRKHLLIHTEKKLFKCDVCEKSFTRKSHFNRHLLFHTGEKRFKCNICEKRYTLSSHLKRHMFSHLQEKPFKCVCCKKSFTLMSQLKRHTSRAQEKPFKCDSCTKSFTYKSELQRHLLIHAGEKSLKCDGCGKIFARKIDQQRHFLLNHTEEKPFKCDCCEKSYKLKSNLKRHMFFHSQEKPYKCYSCEKSFTRKFDLQKHLLIHSGEKAFNCNSCEKSFTMKSHLKQHFFIHTGEKPFRCEICQKSFTRKTHLNRHLVIHTKENPFKCDSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -