Chae015115.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282587.1:9084415-9097914[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 7.6 1.2e+03 2.0 0.3 5 19 84 97 82 100 0.92 2 21 0.026 3.9 9.8 2.4 1 23 112 135 112 135 0.94 3 21 0.012 1.9 10.8 2.4 2 23 142 163 141 163 0.97 4 21 1e-05 0.0015 20.5 4.8 1 23 169 191 169 191 0.98 5 21 0.00013 0.02 17.1 0.8 1 23 197 219 197 219 0.98 6 21 0.048 7.4 8.9 1.0 1 16 225 240 225 242 0.93 7 21 0.45 70 5.9 1.9 1 21 327 347 327 349 0.83 8 21 0.001 0.16 14.2 0.8 1 23 355 378 355 378 0.91 9 21 0.0004 0.061 15.5 2.2 1 23 390 412 390 413 0.93 10 21 0.0035 0.54 12.5 0.8 3 23 424 444 423 444 0.97 11 21 2.6e-05 0.004 19.2 2.4 1 23 450 472 450 472 0.98 12 21 1.2e-06 0.00019 23.4 1.1 1 23 478 500 478 500 0.98 13 21 1.2 1.9e+02 4.5 0.2 2 23 577 598 576 598 0.94 14 21 0.1 16 7.9 3.1 1 23 604 626 604 626 0.98 15 21 0.0054 0.83 11.9 1.9 1 23 632 654 632 654 0.90 16 21 0.00021 0.033 16.4 3.6 1 23 660 683 660 683 0.98 17 21 0.00022 0.033 16.3 3.5 1 23 695 718 695 718 0.94 18 21 0.0074 1.1 11.5 1.0 3 23 729 749 728 749 0.98 19 21 2.7e-05 0.0042 19.2 3.7 1 23 755 777 755 777 0.96 20 21 5.6e-06 0.00086 21.3 0.8 1 23 783 805 783 805 0.98 21 21 0.014 2.2 10.6 0.2 1 21 811 831 811 832 0.96
Sequence Information
- Coding Sequence
- ATGACAGACTGCGTGTACAGTTTCAATTCGCTTGGAACCACAGAAATTGGACATTGGCATAGGTACCTAAGCGGACAGTTAAAACATagaaatattgaaaatatcatcaaCGAAGATGTACCATTACAAAACGAAGATCGTCCAGAGTTTGTAATATTGGAAGAAATTGGGAAACTAGAGTCCTACCAATATGGGTTCAACGGCAAGATTTTGGATGAAAGTTCTGACGCCGTGGAACAGCAATACATCCATTGCGGAAAAAAACTGAATTCTTCCTCATTTGAAAAGCACTCCACAAATTCAAGCACACTTACAAGAGATCCGATACGAGTGTATGTTTGCAGTGTTTGTGACAAACGCTACCAGACCGTGAACGGTTTAAAACAACACAACCACAGATACCACGATTCAGATCCTTCTGTATCTTGCAGTGTTTGTGGTAAAATACTGTCTTGTAAAGAGAGATTGAGGAATCACATGCGAAAGCATTCTGGACAAAGGCCGCATTCTTGTAGTAATTGCAATAAGAGTTTTGTTGTTAAATCTCATTTAGTACAGCATCTGCGAACACATACGGGCGAAAAACCGCATAAATGTCAGTACTGTGGTAGAGCATTTGCTCAGAGGACTGCCATGGTGATGCACGAAAGAATTCATACCGGAAACCGACCGTTTTCCTGCGAGTTCTGTAACAAGCAATACACTTCTAACTCTGATTTGCTCTCACGTTTGATAAGAGAGGAAGGAGGTACACTGATTCTGGCTGTGTATGTTTTTAAATTCAAGACAGCTCTTTCCTACATATACAGACGGTATTTTTCTTGGTTCAAATTCCACTTAGTTTGCCACCTCTTCCGGAGGGAGAGTGTACTCTATGATTTCCGGAAGGTAGAAGAACTCACCATTAAATATGAACCATTGAAAGGAACCGATTATCCAGAGTTAGCAACGGTGCCATTGATTAAGAGTTCAGAGTTCTATCACTGTGATATATGTCTCAAGACTTTCAAAGATATAACTACCGCCATCGAGCACAAATACTTCCACACCGGAGGAAAGCCGTTTTCCTGCACGATTTGTAACACGAACTTCGCGACTTTGCGCACACTCAATGCGCATCATGATGCTGAACATCCGGATTTACCGGATCGAAGCCTATACCAGACGTTCCGCTGTACGCTTTGTGACAAACGGTACAAGTCTTGGAACGGTTTGAGACAACACAACGTCATACATCACAATGTCGACTGTAGAGACCGATCTGCTCCTTGCGATATTTGTGGAAAAATACTGTCCAGTAAAGAAAAATTGAAGTTTCACAAACGCACGCATACTGGGTACAAGCCACATTCTTGTGATATTTGCAACAAGAGTTTTAGTTTAAGGAATCAGGTGGTGCAGCACATGCGAACACATACCGGTGAAAAACCGTTTAAATGCAAGTATTGCGGGAGAGGATTCACGCAGAAAAGTTCCATAACAGCACATGAAAGGGTCCATACGGGAAGCAAACCGTATAACTTATCTCGGTTGTCCAAAGCAACTAGTGTAACTCATGAACCTTTCCCATCGtcaacaataaaaaaggaaGAAATCGAAGATTCTGACTATGAAGTGAAACCATCCAAACCAAAGATGAAATCCAAATTAAGAAAACGTAAAAACCTGGTCAAACGTAAGAAAGCGGATATATCCCATCCGCCGCCCATCGAACTGAACGAACCCATCCAGTGCGACGTATGCAGCGACACCTACAAAAACAACGTTGCTTTCTCCTTGCATTCCATTAGCCACAGCGACGACGGCAAATATTCTTGCCATATTTGCAACTACCGGAACGCGTCGAAGTACCACATAGAAATGCATATCAGGGCACACGAAGGTACCACCAGTTTCAAGTGCGAGATCTGCGACAAGGCGTTCACGGTCAGTACCCACGCTCTGGAGCACAAGTACTTTCACTCCGGTGAGAAACCGTTCCAGTGCGAGATCTGCGGGAAGCACTTCATGTTCTCCAGATTCCTAGCCTCCCACAGGCGCACCCAGCACTGGGAAATCATCACCGGTACTCCCCTCATCAAGTACGACTGTACGATCTGCAAGAAGCACTACACGTCTTCCAGCGGGTTGAAGAGGCACAACCTCAGGAACCACAACACCGAGGGGATAGATACCTCCGTCCTCTGCGACATCTGCGGAAAAAAACTCTCCAGCAACGAAAAGCTCAAGTTCCACCGAAGGGTGCACACAGGGTACCGACCGCACGCTTGCGACGTGTGCGGAAAATGTTTCTCCACAAAGGAGCAGCGCAAAGAGCACCTCAGAGTTCATACCGGAGAAAAGCCGTATATCTGCAAGTTTTGCGGAAAGGGATTCACTCAGAGGTCGCCTCTGAAGATCCACGAGAGGTCGCATACGGGGGAAGCCCCGTATGTGTGCATGCTGTGCACCAGAGGGTTCGTTTCGCGAAGTGCCATTAATAACCACATAAAGCATTGCAACTTCAATCCGGCGTAA
- Protein Sequence
- MTDCVYSFNSLGTTEIGHWHRYLSGQLKHRNIENIINEDVPLQNEDRPEFVILEEIGKLESYQYGFNGKILDESSDAVEQQYIHCGKKLNSSSFEKHSTNSSTLTRDPIRVYVCSVCDKRYQTVNGLKQHNHRYHDSDPSVSCSVCGKILSCKERLRNHMRKHSGQRPHSCSNCNKSFVVKSHLVQHLRTHTGEKPHKCQYCGRAFAQRTAMVMHERIHTGNRPFSCEFCNKQYTSNSDLLSRLIREEGGTLILAVYVFKFKTALSYIYRRYFSWFKFHLVCHLFRRESVLYDFRKVEELTIKYEPLKGTDYPELATVPLIKSSEFYHCDICLKTFKDITTAIEHKYFHTGGKPFSCTICNTNFATLRTLNAHHDAEHPDLPDRSLYQTFRCTLCDKRYKSWNGLRQHNVIHHNVDCRDRSAPCDICGKILSSKEKLKFHKRTHTGYKPHSCDICNKSFSLRNQVVQHMRTHTGEKPFKCKYCGRGFTQKSSITAHERVHTGSKPYNLSRLSKATSVTHEPFPSSTIKKEEIEDSDYEVKPSKPKMKSKLRKRKNLVKRKKADISHPPPIELNEPIQCDVCSDTYKNNVAFSLHSISHSDDGKYSCHICNYRNASKYHIEMHIRAHEGTTSFKCEICDKAFTVSTHALEHKYFHSGEKPFQCEICGKHFMFSRFLASHRRTQHWEIITGTPLIKYDCTICKKHYTSSSGLKRHNLRNHNTEGIDTSVLCDICGKKLSSNEKLKFHRRVHTGYRPHACDVCGKCFSTKEQRKEHLRVHTGEKPYICKFCGKGFTQRSPLKIHERSHTGEAPYVCMLCTRGFVSRSAINNHIKHCNFNPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -