Chae010342.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282585.1:54698361-54702743[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00013 0.02 17.0 2.2 1 23 156 178 156 178 0.99 2 13 0.0092 1.4 11.2 0.3 2 23 214 235 213 235 0.96 3 13 0.0001 0.016 17.3 3.0 1 23 255 277 255 277 0.95 4 13 0.00012 0.019 17.1 0.3 1 23 282 304 282 304 0.98 5 13 9.2e-07 0.00014 23.8 0.2 1 23 310 333 310 333 0.97 6 13 2.8e-06 0.00042 22.3 2.1 1 23 339 361 339 361 0.98 7 13 8.6e-05 0.013 17.6 1.2 1 23 367 389 367 389 0.98 8 13 0.0022 0.34 13.2 3.7 1 23 395 417 395 417 0.90 9 13 1.5e-05 0.0024 19.9 1.1 1 23 427 449 427 449 0.95 10 13 0.00051 0.078 15.2 0.4 2 23 456 477 455 477 0.94 11 13 0.054 8.2 8.8 1.6 1 23 487 509 487 509 0.84 12 13 2.4e-06 0.00037 22.5 0.4 2 23 515 536 514 536 0.97 13 13 3.5e-07 5.4e-05 25.1 2.0 1 23 541 563 541 563 0.97
Sequence Information
- Coding Sequence
- ATGAATGAAGGTAGGAAAGGTTTAGGTGCTCCTATAAAAtacttgaaaaatgaaaacaaccCAGGCATTAAACAGGAAATTGTAGCAGAGATTTGTGAGGATCAGCCTCCAGATCTCCCGAATTATGTAACTATCAAAAATGAAGTAGTAATAGACAAATTAGATATCGACTTGAAACAAGAGGTGCACAAAACTCATTCAGAAGTTCAGCTGGCAAAGTCTGAACACTCTAATGAAGACAGTATAGAAACTGAGCCATTGTCTCCGCTGAAAATAAAAACCGAATGTGAGTTTGAAGAGTTTGATCAACCTGATCAAATACCAGTTGAAGATATCGATTCCATTCTTTTTAACGAACCCAAGGACTTTGGCAGTACTAGGAATTCTAATGAGCAAACTGATGAAGTTTTGGACAAAGATTCTACTTCACAAGGCAATTCACAACCCTCTAGTATAAAGGCTCTGTTCAAATGTGAAGTTTGTACCAAAAGTTATGCAACAGAAAAGGTCAAGAAACGGCACATGCGTACGCATTTCGGGAAAGGCCCTGTCCCCTGTACAGTGTGCTGCGAAGgaattgaaaatatggaattatacATTGTACACTCCGGAACTCACCAGGAAGATCTATCCGGGCTCTATTGCGAGATTTGCTACAGAAGATTCCCCTTACAAGCAGACCTCGACAATCATCGTACATCCCACCAAAACATAACCTCAAAGTTCGAACCAGACGACATACCGCGCGAAAATGGGAGACGCTATCAGTGCCATTACTGCCCAAAGGACTTCTCCAACCGATCGGACTTCTTCGGCCACGAGAGCCTCCACGGAAAACCGCTGTTCCAGTGCCCGATTTGCTTGAAGAACTTCGGCAAGATCTACGAGTTGGAGAAGCACGAGAGAATCCACACCGGCTCGAAGCCCTTTTCCTGCGAGATCTGCTCAAAATCATTCGTCCAGCAAGGTTCATTGAACGTTCACCAAAAAATCGGGCATTCCGACGAGAAGCTCTTCCGGTGCAGTCTGTGCCCCATGAACTTCTCCTACAGTTCCAGTTTGAAAAGACACCTGCGGAACCACCGAGGCGAGAGACCGTACGAGTGCAAGGAGTGCTTCAAGAGCTTCAAGTTACGGTATTTGTTGGAGGAACATGTGATGAACCACACGGGCGAGCTGCCCTTCGCCTGTACAGAGTGTCCCCAGAAATTTAGACGGATGAGCACCCTGACGAAGCACTGCAGCAGCCACTATTCTGCCCACAGTGAAGCTTATACCTTCCAGTGCGGGACTTGCGACAAGATCTTCTCTAAAAGTGAGAGTCTAAAGCGACACGAAACGTTGCACGACGAAGGCGGAGAGATCAAATGTGTCTCCTGTAGGAAGACTTTCAAGGACGAAGACGGCTTGAAGAATCATCAAGCCGCTCACGACCACGCGCGCGCTATTGAGCGCCCGTTCGAGTGTCCCTTCTGCTCCAGGAGGTTCACCACGAAGAACAGAAGGGACATGCACGTGGGGACCCACCCGACGGCGCCGATTCAGTGCGAGATGTGCGACAAACAGTTCGCGATCAAGGAGACTCTGAGGAGGCACATGCGCGTGCATTCCGAAGAGCGTCATCCGTGCCAGGTTTGCTCCAAAGTTTTCCGTAGCGCTAGGAACCTCAAGCAGCATATTAGGACTCACTCAAAGAGGGGGAGGGGGCGGAGTAACTGA
- Protein Sequence
- MNEGRKGLGAPIKYLKNENNPGIKQEIVAEICEDQPPDLPNYVTIKNEVVIDKLDIDLKQEVHKTHSEVQLAKSEHSNEDSIETEPLSPLKIKTECEFEEFDQPDQIPVEDIDSILFNEPKDFGSTRNSNEQTDEVLDKDSTSQGNSQPSSIKALFKCEVCTKSYATEKVKKRHMRTHFGKGPVPCTVCCEGIENMELYIVHSGTHQEDLSGLYCEICYRRFPLQADLDNHRTSHQNITSKFEPDDIPRENGRRYQCHYCPKDFSNRSDFFGHESLHGKPLFQCPICLKNFGKIYELEKHERIHTGSKPFSCEICSKSFVQQGSLNVHQKIGHSDEKLFRCSLCPMNFSYSSSLKRHLRNHRGERPYECKECFKSFKLRYLLEEHVMNHTGELPFACTECPQKFRRMSTLTKHCSSHYSAHSEAYTFQCGTCDKIFSKSESLKRHETLHDEGGEIKCVSCRKTFKDEDGLKNHQAAHDHARAIERPFECPFCSRRFTTKNRRDMHVGTHPTAPIQCEMCDKQFAIKETLRRHMRVHSEERHPCQVCSKVFRSARNLKQHIRTHSKRGRGRSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -