Basic Information

Insect: Chrysolina haemoptera
Gene Symbol: -
Assembly: GCA_958298965.1
Location: OY282597.1:5487958-5492399[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0018 0.27 13.5 0.7 2 21 120 139 119 140 0.94

2 12 4e-05 0.0062 18.6 3.4 1 23 148 170 148 170 0.99

3 12 1.9e-07 2.9e-05 25.9 0.3 1 23 176 198 176 198 0.98

4 12 1.2e-06 0.00018 23.5 2.2 1 23 204 226 204 226 0.99

5 12 0.0009 0.14 14.4 3.0 1 23 232 254 232 254 0.98

6 12 0.0042 0.65 12.3 0.1 2 23 265 286 264 286 0.97

7 12 1.9e-06 0.00029 22.8 1.6 1 23 294 316 294 316 0.98

8 12 5.4e-07 8.2e-05 24.5 3.2 1 23 322 344 322 344 0.98

9 12 9.6e-07 0.00015 23.7 0.7 1 23 350 372 350 372 0.99

10 12 5.1e-06 0.00078 21.5 2.7 1 23 378 400 378 400 0.99

11 12 2.3e-05 0.0036 19.4 0.8 1 23 406 428 406 428 0.98

12 12 0.0017 0.26 13.5 2.8 1 23 434 457 434 457 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0018	0.27	13.5	0.7	2	21	120	139	119	140	0.94
2	12	4e-05	0.0062	18.6	3.4	1	23	148	170	148	170	0.99
3	12	1.9e-07	2.9e-05	25.9	0.3	1	23	176	198	176	198	0.98
4	12	1.2e-06	0.00018	23.5	2.2	1	23	204	226	204	226	0.99
5	12	0.0009	0.14	14.4	3.0	1	23	232	254	232	254	0.98
6	12	0.0042	0.65	12.3	0.1	2	23	265	286	264	286	0.97
7	12	1.9e-06	0.00029	22.8	1.6	1	23	294	316	294	316	0.98
8	12	5.4e-07	8.2e-05	24.5	3.2	1	23	322	344	322	344	0.98
9	12	9.6e-07	0.00015	23.7	0.7	1	23	350	372	350	372	0.99
10	12	5.1e-06	0.00078	21.5	2.7	1	23	378	400	378	400	0.99
11	12	2.3e-05	0.0036	19.4	0.8	1	23	406	428	406	428	0.98
12	12	0.0017	0.26	13.5	2.8	1	23	434	457	434	457	0.97

Sequence Information

Coding Sequence: ATGGCTTCGGATGCAGTTGATGTCTTGGTAAAAAAAGAACCTCAAGATCTAGAACCAGAGCCATTGGTACAAAATTATGTTCCCGATGTTGACGTTAAAGACGAAAGTGTCACTGATTTTGACCTGGATAAACCGGATTTAATTAATCCGGCAAGTACTTCAATGAGTGATGATCCAGATACATGGGTAAAAGAAGACAATGTTCCATCTGACGAAGATGTTGATAAAGACCACAATTCTTCAGTTTCCGACGAACCATCTCACAAGATCACTTTGGAAACACTCAGGTACGGGTCCGAACAGGGAGACGACTCTGACAGTAGTAGTAATTGCAGTGAAGATAGCGAAGCGGATTTGAAGTGTAAAATTTGTAAAGAAGAATTTAACGATGACTATTACCTCCAACAACACTACAAGCGCAGGCGGCTTGCTGAAAAGAGTTATAAATGTTGTGgttgtgaaaaaattttcaGGGATAATACTCAACTGAACGTTCACTCCAGGAAGCATACCGGAGAGCAGCCGTATGCTTGTGGTACTTGTGGTAAAAAGTTTTCAGTGAATGGTAACTTGAGCAAGCATATGAGAATCCACACGGGGGAGAGACGGTTCACTTGTGATATTTGTGATCGAAAATTTACTCAGTTTGCACACTTGGAAGATCACATTAAAACACACTCAGGTGATCGTCCATACGTTTGTGACTTCTGCAACAGTTCCTTCAAGACCACAGCCAGACTGAGAAAACACAGAAAGTCTCACGAGGATGGTAAAGACAGTAAACGATCAGTTCCATGTCCGATATGCCTGAGAGTACTGAAAAGTACGAAACAGCTTCTCACTCATTTGGAAACACATGACGAAGGACCTCACAATCCATTTTCCTGTGATTATTGTGGAAAgagttataaaaatttgttcTCATTGAACATCCACCTGAAATCCCACGGCAACGTTCGAGATTTCAAATGCAGTTTGTGTGACAAAGCATTCACCAATGCCAGTCATCTTAGGAGACATTCAAATTCTCATACAGGTATAAGGCCTTTCACTTGCGACATATGCCTGAGAGGATTTCCTTCGTCGCAGAATCTCAAACGCCACATGATGACCCACACTGGCGAGAAACCGTTCACTTGTACCGATTGCAACAAGAGTTTTCTGACGTTGGAAAATCTGAATCGTCACAAGAGGACGCATACCGGAGAGAAACCGTTTCCGTGCGATGTTTGCGGGAGGTTTTTCGCGCATAGCACAACCGCCAAGGAACACATGAGGGTACATACAGGAGATAAACCATTCCAATGTGAGTTCTGTGACAAGAAATTCTCCCTCAACAAAGCCCGTTACAAGCACATTCGGGAAAAGCACCCCGCATTCTTCTCCGAATTCAAGCGACTCAACGATTTGCCGCCAAATATGAAGAGGGCGcgagaaaaaatgaaaaaagaaatcATCCGTCCCGACGAACCTGGGATAGAGCAACTACCGCTTAATTGTAACGGGGTCAATGGTGAGAGGCTGATGAAGGTCGAAGGAGATGATTCCAACCATTCAGATGCTGATGTTAAGGATGTCAAAGTTCTTCCCGGCTCTCCAATGAAATGTGATGATTCTACTGATATCAAAGAGAATTTCGACAATATTAAGGTTAAAGAAGAACCTAAAGCGGTTTCTATTAAAATGGAATGTGATTATTATGACTGTAGCTAA
Protein Sequence: MASDAVDVLVKKEPQDLEPEPLVQNYVPDVDVKDESVTDFDLDKPDLINPASTSMSDDPDTWVKEDNVPSDEDVDKDHNSSVSDEPSHKITLETLRYGSEQGDDSDSSSNCSEDSEADLKCKICKEEFNDDYYLQQHYKRRRLAEKSYKCCGCEKIFRDNTQLNVHSRKHTGEQPYACGTCGKKFSVNGNLSKHMRIHTGERRFTCDICDRKFTQFAHLEDHIKTHSGDRPYVCDFCNSSFKTTARLRKHRKSHEDGKDSKRSVPCPICLRVLKSTKQLLTHLETHDEGPHNPFSCDYCGKSYKNLFSLNIHLKSHGNVRDFKCSLCDKAFTNASHLRRHSNSHTGIRPFTCDICLRGFPSSQNLKRHMMTHTGEKPFTCTDCNKSFLTLENLNRHKRTHTGEKPFPCDVCGRFFAHSTTAKEHMRVHTGDKPFQCEFCDKKFSLNKARYKHIREKHPAFFSEFKRLNDLPPNMKRAREKMKKEIIRPDEPGIEQLPLNCNGVNGERLMKVEGDDSNHSDADVKDVKVLPGSPMKCDDSTDIKENFDNIKVKEEPKAVSIKMECDYYDCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00328457;
90% Identity: iTF_00328457;
80% Identity: -