Chae050614.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282599.1:28876334-28879970[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0024 0.37 13.0 3.6 1 23 308 330 308 330 0.98 2 14 7.9e-06 0.0012 20.9 3.3 1 23 336 358 336 358 0.98 3 14 0.00046 0.071 15.3 1.5 1 23 364 387 364 387 0.94 4 14 2.1e-05 0.0032 19.5 1.4 1 23 392 415 392 415 0.96 5 14 6.4e-06 0.00099 21.1 5.1 1 23 420 442 420 442 0.97 6 14 0.00093 0.14 14.4 1.9 1 23 448 470 448 470 0.98 7 14 0.013 2 10.7 2.1 1 22 476 497 476 497 0.94 8 14 1e-05 0.0016 20.5 0.7 1 23 504 526 504 526 0.98 9 14 1e-06 0.00016 23.7 0.6 1 23 546 568 546 568 0.98 10 14 7.8e-05 0.012 17.7 4.6 1 23 574 596 574 596 0.98 11 14 2.8e-06 0.00043 22.3 2.4 1 23 602 624 602 624 0.98 12 14 3.4e-06 0.00052 22.0 0.3 1 23 653 675 653 675 0.97 13 14 4.6e-07 7.1e-05 24.7 1.5 1 23 681 703 681 703 0.98 14 14 8e-06 0.0012 20.8 2.0 1 23 709 732 709 732 0.94
Sequence Information
- Coding Sequence
- ATGGATTCAATTATAACCTTACAAGATTTCCCGTTTATTTGTAGAATTTGTTGTCTTAAGCGAAATAATTTGAGATTGTTCGAAGAAGAACATTATTTATTGGATTTATTCAATTCCATCAGGCAAATTGAGGTCCATTCAAGAGACGAATTTCCAAGAAAAATATGCAATGAATGCACCATAATACTAAAAGAGTTGTCATTGTTTATCGACAATTCAAAGAATAATGACGCAGGTTTTGTAAGAAATATAACGCcgaaagaaaaaattgttgaatatgaGGATGACATTGGCGGTAGGCTGGCGCAAAACTCTATAGAAACAACTAAAAAGAGCGAGGAAGATATGTTTCTCCAGAAATCCAAAACATGTCGAATTTGTTTATCTTCATCAACTAGAGTGATACCATTTAAAGAAAAGATACATCTGATGCAGCTATtccaaaatattacaaacatcAATGTGGAAGATGAATCCAGCTCTTCAAAAATTAATAGCATATGCAACAAATGCATAAACAAATTAGAAAAGATATCATCGTTCGTCAGTTCATTTATATGTAATCatgaaaaacttgaaaacgCCATTAGTAGAAATGAGAATTTGGAAacggaaaattattcaaattcaattgatgttgaaaaatcaaCGTGTCACGATTTAAAACTTGGAAATGTCATAGATAGAAATGAAGAACTGACTGAATATATGAGTGGAGAAATCGCATTTGCTGATGGAAATGAAAACACGCTTGAGATTATTGATATCAAGAGAGAAGTTATCGACAGTGAACTTTCAGATTCTACTGAGAGAAATTACCACAATGATTTGGAATTCCATCAAGTGTTTCCCGAAGAAAAGGCTTTTGAGGATACTTCGTCAAAAAATAATGCCAAGTGTCTGACAAGTGGAAAAAAGTCGTTCAGGTGTGATAGCTGCAACAAGAGTTTCGGATGCAGGCAATCTTTACAAAGGCATATGCTCATCCACTCTGAAGAAAAGCCATTCAGATGTGATATCTGCGAAAGAAGTTTTTCCTCGAAGTGTAGTTTGCGAAATCATCAGCTCATTCACTCTGGAACGAAACCTTTCAGATGTGACATCTGCGTAAAAAGATTCATCGAAAAGAGAAGTTTGGAAAGACATTTgttcaataaacacaaaaaaaagcaATTCATATGTAAGAGCTGCAATAAAAGTTTTtatctgaaaattaatttaaaacgGCATATGCTTATCGATCATGGAGGAAGAGTGCACAGATGTAATAGTTGCGGAAAAAGTTTCAAGACAAACGCTCATTTGAAGCAGCATTTGGTTACTCACTCCGAAGAGAAGCCATTCAAATGCGACAGCTGCGAAAACAGTTACACGCAGAAGGGCACTTTGACTCAGCATAAGCTAACTCACATCACAGAAAACTCATTCAAATGTGGTTGCTGTGAAATTAGTTTCACAAACAAAACAACTTTGCGACAGCATTTACTCACACCTGTAGGAAAAAAGCCGTTCCAATGTGGTAGCTGCAAGGAAAGATTTGCTCAGAAATATGATCTGCAACAACATATGCTCATTCATACTGAAGATAAGACGTCCACTTTTCCTAATATGTCTACTCGCACTAGAGAAAAGCCGTTTAAATGTGATGGCTGCGAAAAAAGGTTCTCTGTGAAGGGATCTTTGAAACAGCATATGCTCATACATTCTGATGAGAAGTGTTTCAAATGCGATAGATGCCAGAGAAGATTCGCTCAGAAAAGTCATCTGAAACTACATACCGTTACTCATACTGGGGTAAAGCCATTCCAATGTGATCGCTGTAAGAAATCTTTCACTCAGAAACCGAATTTTAAACTACATATGCTCGTTCATACTGAAAATAGGCCAGTGAAATCTAGTAACAAGCGAAAGTCCACCTCACATAATCAAGTGTCTACTCTCGCTGGAGAAAAGCCGTTTAAATGTGATGTCTGCGAAAAAAGTTTTTCTGTGAAGGGCAGTTTGAAACTGCATATGGTCATACATTCTGCTGAGAAGCCATTCAAATGTGAAGGCTGCGAAAAAAGTTTCTTTCAGAAGGGATATTTGAAACGGCATATGCTCGTACATTCTGATGCGAAGCCATTCAAATGTGAATACTGCGAAAAAAGTTTCAAGCGAAAAGAATCTATGAAGCAGCATTTGGCGTTAAGTCATCCTTACGTGTCGCTAGAAAATATTTGTTCAGGAATGTGA
- Protein Sequence
- MDSIITLQDFPFICRICCLKRNNLRLFEEEHYLLDLFNSIRQIEVHSRDEFPRKICNECTIILKELSLFIDNSKNNDAGFVRNITPKEKIVEYEDDIGGRLAQNSIETTKKSEEDMFLQKSKTCRICLSSSTRVIPFKEKIHLMQLFQNITNINVEDESSSSKINSICNKCINKLEKISSFVSSFICNHEKLENAISRNENLETENYSNSIDVEKSTCHDLKLGNVIDRNEELTEYMSGEIAFADGNENTLEIIDIKREVIDSELSDSTERNYHNDLEFHQVFPEEKAFEDTSSKNNAKCLTSGKKSFRCDSCNKSFGCRQSLQRHMLIHSEEKPFRCDICERSFSSKCSLRNHQLIHSGTKPFRCDICVKRFIEKRSLERHLFNKHKKKQFICKSCNKSFYLKINLKRHMLIDHGGRVHRCNSCGKSFKTNAHLKQHLVTHSEEKPFKCDSCENSYTQKGTLTQHKLTHITENSFKCGCCEISFTNKTTLRQHLLTPVGKKPFQCGSCKERFAQKYDLQQHMLIHTEDKTSTFPNMSTRTREKPFKCDGCEKRFSVKGSLKQHMLIHSDEKCFKCDRCQRRFAQKSHLKLHTVTHTGVKPFQCDRCKKSFTQKPNFKLHMLVHTENRPVKSSNKRKSTSHNQVSTLAGEKPFKCDVCEKSFSVKGSLKLHMVIHSAEKPFKCEGCEKSFFQKGYLKRHMLVHSDAKPFKCEYCEKSFKRKESMKQHLALSHPYVSLENICSGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -