Chae048722.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysolina haemoptera
Gene Symbol
-
Assembly
GCA_958298965.1
Location
OY282599.1:300508-308166[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 4.7e-05 0.0072 18.4 1.9 1 23 354 376 354 376 0.98
2 17 1.4e-05 0.0021 20.1 0.8 1 23 382 404 382 404 0.98
3 17 0.00014 0.021 17.0 2.2 1 23 410 432 410 432 0.95
4 17 0.0001 0.016 17.4 2.1 1 23 438 460 438 460 0.98
5 17 0.0024 0.36 13.1 10.1 1 23 466 488 466 488 0.97
6 17 8.1e-06 0.0012 20.8 6.8 1 23 494 516 494 516 0.99
7 17 2.7e-05 0.0042 19.2 1.0 2 23 551 572 550 572 0.97
8 17 0.0067 1 11.7 6.7 1 23 578 600 578 600 0.98
9 17 8.4e-05 0.013 17.6 2.4 1 23 859 881 859 881 0.99
10 17 3.2e-06 0.00048 22.1 1.2 1 23 887 909 887 909 0.98
11 17 8.1e-06 0.0012 20.8 4.9 1 23 915 937 915 937 0.99
12 17 4.3e-06 0.00066 21.7 2.6 1 23 943 965 943 965 0.99
13 17 5.7e-07 8.7e-05 24.5 3.3 1 23 999 1021 999 1021 0.99
14 17 0.017 2.7 10.3 5.0 1 23 1027 1049 1027 1049 0.98
15 17 0.1 16 7.9 12.0 1 23 1055 1077 1055 1077 0.97
16 17 1.8e-06 0.00028 22.9 1.6 1 23 1083 1105 1083 1105 0.98
17 17 0.1 16 7.9 0.4 1 13 1111 1123 1111 1127 0.91

Sequence Information

Coding Sequence
ATGGGAGAGTTTGAGagcaatgaaaacaaaaaatcggacataaatttggtggattttcCCTACATTTGCCGAATATGTTTCAAGCGAGATGGTTTGCGGTTATTCAAGGAGGAAGATCATTTGTTAGAAGTATTTCTAACCATTACGAAGATTGATGTACATTCAACAGCCAACTTCCCAAGAAATATATGCAGTGACTGCATCAAAACACTAGAAGATACATCAATGTTAATTGGCACCTCCAAGTATAATGACGCAAGGTGGGGCAAAAACTTCAtgtcaatcaatgaaaataaacaTGTAGAACCATTTGATTATGGAATGTCTGAAACACATTTAAAAAGCGAAACTACTGAAGAATCTAAAGAGGAATTACAATATATCAAAGGATTTGAAATTTGTCGAATATGTTCTTCACCAAGTAGCCTAACACCTTTTGAAGAAAAGGCACATTTGATGCAGGTGTTTCAGAATATTACCAACATTGATgtGAAAGCTGAATACTACGTCTACAATAGGAATAGAATATGTAACAAATGCATAAAcgaattagaaaaaatatcctTATTCATCAGTGTGTCATTGTGTAATGACACAAAACTTGAAACTATCAGCAAAAATAATCCTGcaggaactgatttttttttagaaaaaaatgcaattgaTATCGGTTCATCAAAGTGTTatgatatgaaatttgaaagtaaAGAAAGAAATGAACTGAAAGCGGATGATTTAGATGAAAATGCATGCGGTTATGAGAGCAAAAATGTACATACAATTGTTGATGTGAAGCAAGAAACTGTTGACATATCTGAAGATTCAAAAGATCGAATCTATCTTAGtggattgaaattatttcgtaaAAGTCACCCTGAAGAAAATTCTTACGAAAGTGGTACATGCAAAGATGAGTTCAGTACTGATTCCCATCTGAAAATATGTTCAGAAGAATTTGATATCGATTTAGAAACCCAGTCTAGACAAAATCAATTCAAATGTGATTATTTTGAGGATAGTTTGCAACAGGATATGCTCATTCACAATGGGGAAAAATCATTTAATTGTGATTTCTGCAAGAAAAAATTTGCTCGTAAGgatgttttgaaaaatcatatactCACTCACACCGGAGAGAAACCTTTTGAATGTGATGTTTGCGAAAAAAGGTTCACTTTTAAAAAAGGTCTGCAACGACATTTGATCATCCATTCTGGAGAAAGGCCTTTCAAATGTGAAATctgcgaaaaaaaatttactcaAAAGGACAGATTGCAACAGCATTCTTTCATCCATTCTGAAACAAAGCCTTTCAAATGTGACTTTTGTGAAAGAAGATTCATCCAGAAGTATATGTTGAAAGATCATTTACTCTCTCACAATGACGAAAAGCCATTCGAATGCGATTGCTGCGGAAAATGTTTCAGTCAGAAAAGACATTTTCGAAAACATTTGTTAACTCACAACGGACAGAAGCCATTCAAATGTGAAATCTGCCAGAAAAGTTACACTCATAAGCGTAGTTTGCAACATCATATGCTCACTCACACTGGTGAGAAGCCATTCAAATGTGAATGTTGCGAAAAAAGTTTCATTCTaaaaaaaagtttgcaccatcaCTCTTTCGTTCATTCGGGAGAACGGCCTCTTAAATGTGACCTTTGCGAAAAAAGTTTCACCCAGCAGCAGGCTTTGAAAGATCATTTATttactcacactgaagaaaagccgtTTAAATGTGATTGTTGCGGAAAATGTTTCAATCAAGGCAGGTATTTGCAAAAACATTTGCTAACTCATACAGAAGAAAAGCCATTCGCGTGCGATCGAAGTGATTTGAGATTATTCGAAGAAGAAGATTATTTGTTGGATCTCTTTCATACCATCAGGAAAATTGATGTCCCTTCAACAGcgtattttccaaaaaatatatgtgATGATTGCATCAATAAACTGGAAGATATATCAACGTTTATTGAAACGTCCAAGTTTTATGACAGAGGGTTGGTAAAAAACTTGATTCCGAAACTCGAAATTGAATGTGTGGAAACAATTGAACATAACACGTCTGTTGAACATGGGAATGCTAACAAACTTCCAGGAACAACTGAGGAAAATAAAGAGGATATGTATTTCCAGAAATCTAAAATTTGTCGTATTTGTTTGTCTCCAAGTAATTTGATACCATTTGAAGAGAAGGTGGAGCTGATGCAgctgtttcaaaatatcactaaCAGTGATGTGAAACCTGACGACAATTTCGTAAGCAAGGACTGTATATGCGAAACATGTATCGACAAACTAGAAATGATATCGTCATTTATCAGTTTATCACTGTTGAATgataaaaaacttaaaaatgcCTTTGGTActgtcaaaattgaaagttATTTCAAATTCGAGAGTGTCACTGctcaaaatgatattttatttgagAACAATGCATCTCATGCAAAAAATGAGTTAATTGATGTCAAGGAAGAAGTAATCGACAACGAAATCGTATCTTCTACCATGGAAAACTATCAAAACAATTCAGAACGCCATTTTCTCACTCAGACTGCAGACAAACCCTTCAAATGTGTTAGCTGTGAAAAAAGTTTCGATATCAAAGGGAACTTGAAACATCATATGCTCACTCACACGGGTGAAAGGCCCTTCAAATGTATGTTGTGCGAAAAAAGTTTCAGTCAAAGAGTTAACTTGCAACAGCATTTGATTACGCACACCGGGGAAAGGCCCTTCAAATGTGATTACTGTGAGAATAGTTTCACTCGGAAAAATCATCTACAACGGCATTTACTCACTCACACTGGGGAAAAGCCATTCCAATGTGACCGCTGCGACAAAAGTTTCACTCGGAAATTATACTTGCAACAGCATTTGCTCACCCACATCGGGTTGAAACCATTCAAATGTGATTGCTGCGAGAAGAGATTTTCttgcaaaaataatttgaataagcACTTTTTCACTCACACCGGGGACAAGCCATTCAAGTGTGATTATTGCGAAAAAAGTTTCACGCAAAAATACTATTTGCAACAGCATCTGCTGACTCACTCCGGAGAGAGGCCATTCAAATGCAAATGCTGCGAGAAAACTTTCACCAGGAGAGACGTTTTGCTACGCCATTCGCTCACTCACAGCGGGGAAAGACGCTTTCATTGCCCTTTCtgtcagaaaaaatgtattcacaaacATCATTTGCAGCAACATTTACTCATCCACACCGGGGAAAGACCCTTCAAATGCACCGACTGCGATAAAACTTTCATTCAGAAACAAAATTGGGAAGATCACATGTTCACTCACACTCAAGAAAAGCCGTTCACATGTGACGACTGCGAAACAACATTTAGAAGACCATTTGCGGCGAACTCATACTCGGGAAAAGCCATTCAAATGCGATCACTGCGAGAACGGTTTCACTCGGAAGGACCTTCTGCAACGGCATATGCTCAGTCATACTGGAGAGCGGCCATTCCAATGTCACATCTGCGAAAGAAACTTCATTCAGAAACACCATCTGCGAAAGCATTCACTCACTCACACTTGACAGAGGCATCCGACCACGTAACTGGCCCTATATCAGTAATCTGCTCACGTCGTGTGAGGTTGGATTCAGCCCTGAAGTCAGGAGGTGTCGCCGGCTACCAGCTGTGGAATTATGAGCACTCAATCCGGTCAGTGGAAGTCATGAGTATCAACTGA
Protein Sequence
MGEFESNENKKSDINLVDFPYICRICFKRDGLRLFKEEDHLLEVFLTITKIDVHSTANFPRNICSDCIKTLEDTSMLIGTSKYNDARWGKNFMSINENKHVEPFDYGMSETHLKSETTEESKEELQYIKGFEICRICSSPSSLTPFEEKAHLMQVFQNITNIDVKAEYYVYNRNRICNKCINELEKISLFISVSLCNDTKLETISKNNPAGTDFFLEKNAIDIGSSKCYDMKFESKERNELKADDLDENACGYESKNVHTIVDVKQETVDISEDSKDRIYLSGLKLFRKSHPEENSYESGTCKDEFSTDSHLKICSEEFDIDLETQSRQNQFKCDYFEDSLQQDMLIHNGEKSFNCDFCKKKFARKDVLKNHILTHTGEKPFECDVCEKRFTFKKGLQRHLIIHSGERPFKCEICEKKFTQKDRLQQHSFIHSETKPFKCDFCERRFIQKYMLKDHLLSHNDEKPFECDCCGKCFSQKRHFRKHLLTHNGQKPFKCEICQKSYTHKRSLQHHMLTHTGEKPFKCECCEKSFILKKSLHHHSFVHSGERPLKCDLCEKSFTQQQALKDHLFTHTEEKPFKCDCCGKCFNQGRYLQKHLLTHTEEKPFACDRSDLRLFEEEDYLLDLFHTIRKIDVPSTAYFPKNICDDCINKLEDISTFIETSKFYDRGLVKNLIPKLEIECVETIEHNTSVEHGNANKLPGTTEENKEDMYFQKSKICRICLSPSNLIPFEEKVELMQLFQNITNSDVKPDDNFVSKDCICETCIDKLEMISSFISLSLLNDKKLKNAFGTVKIESYFKFESVTAQNDILFENNASHAKNELIDVKEEVIDNEIVSSTMENYQNNSERHFLTQTADKPFKCVSCEKSFDIKGNLKHHMLTHTGERPFKCMLCEKSFSQRVNLQQHLITHTGERPFKCDYCENSFTRKNHLQRHLLTHTGEKPFQCDRCDKSFTRKLYLQQHLLTHIGLKPFKCDCCEKRFSCKNNLNKHFFTHTGDKPFKCDYCEKSFTQKYYLQQHLLTHSGERPFKCKCCEKTFTRRDVLLRHSLTHSGERRFHCPFCQKKCIHKHHLQQHLLIHTGERPFKCTDCDKTFIQKQNWEDHMFTHTQEKPFTCDDCETTFRRPFAANSYSGKAIQMRSLRERFHSEGPSATAYAQSYWRAAIPMSHLRKKLHSETPSAKAFTHSHLTEASDHVTGPISVICSRRVRLDSALKSGGVAGYQLWNYEHSIRSVEVMSIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-