Chae050617.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282599.1:28907613-28923798[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.3e-05 0.014 17.5 5.4 1 23 403 425 403 425 0.98 2 13 6.5e-06 0.001 21.1 0.9 1 23 431 453 431 453 0.97 3 13 5.2e-06 0.0008 21.4 0.9 1 23 459 481 459 481 0.99 4 13 3.6e-06 0.00055 21.9 1.8 2 23 488 509 487 509 0.97 5 13 4.4e-06 0.00068 21.7 3.9 1 23 515 537 515 537 0.98 6 13 1.3e-06 0.0002 23.3 1.1 2 23 544 565 543 565 0.97 7 13 4.2e-06 0.00064 21.7 1.8 1 23 571 593 571 593 0.97 8 13 2e-06 0.0003 22.8 1.0 1 22 599 620 599 620 0.95 9 13 4.2e-06 0.00064 21.7 0.9 1 23 627 649 627 649 0.99 10 13 5.8e-06 0.00089 21.3 0.6 2 23 656 677 655 677 0.97 11 13 4.1e-06 0.00063 21.7 0.6 1 23 683 705 683 705 0.97 12 13 3.7e-06 0.00057 21.9 2.3 1 23 711 733 711 733 0.98 13 13 0.0055 0.84 11.9 7.4 1 23 739 761 739 761 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTGTTTGAGAATAGTGAAAACAAAGTGTTTGATATAAAATTGGTCGATTTTCCCTTTATTTGTCGAATATGTTTGAGGCGAGGTGATTTGAGATTGTTCGAAGATGAAGATTATTTGTTGGATTTATTCGTAACCATCACGAAGATTGACGTCCGTTCAACAGTAAATTTCCCAAGAAATATATGCAATGAATGCATCAATAAACTAAAAGATATATCATTGTTTATTGAAATCTCAAAGTTTGATGACGCTACAAGGCAgcagaaaaaagaaattgaaaatgatgatgaagttACTTTGCAAACGTCTCAAGGTCGTGTAGTGAAAACCAAAAAATCAACTGAAGAGGAAGAGGATATTTATAATGAAGGATTTGAAGTTTGTCGAATCTGTTTGTTAACAAGTTGCCTAACACCTTTTCGAGAGCAGAAACATTTGATGGAGTTATTTCATAATATTACAAATATCGATgtcGATTCAACTGTCAATTTACCAAGGAACATATGCAATGCGTGTATCAATAAACTAGAAGATATATCATTGTTTATTGATATATCAAAGTACAATGCCGCAGAAAGTTTAATtccgaaaaaagaaaatgaaagtGAAGCAATAGTTTCATGTGAAACGTCTCAAAGTGATATTGTGGTAAGAACCGAAAAAACAACTACAAAGGAAGATGATATTAATGTGGAAGGATTTGACATATGTCGAATCTGTTCGTTAACAAGTTGCCTAACACCATTTGAAGAGAAGGCACATTTGATGCAGTTATTTCAGAATATTACAAATATTGATGTGAGAGCTGAAACCAGTTTCTCAAAAAGGAACAGCATATGCAACAAATGTATTACCGAATTAGAAAAGATATTGTTATTCATCAGTGTATCATTTTATAATGATATGAAACTTAAAAATACTGTTGGAGGGAATGAGGTATTGAAAACCAAAGATTATTTGGAAAAGACTGCAGTTGATGCTAGtaaatatatgaaatttgaaagtatttCGGACAGAAATGAAGTAAAAGTGGAGAACAATTCCAGTGAAAGTTCATGCTGTTACGAAAGCAAGGATTTGCATGCTGTTTTTGATATCAAGGAAGATCCTGAAACATCTGTTAGAGGAAACACTCAAGATAGTTTAGCATTATGTAGTGAAACCGACACTGTAGAAAAACCATTAGGTGGAGAAAAGCCATTCAAATGTGATTGTTGCGAAGAAAATTTTTCTCGGAAGGAGTATTTAAAAAAGCATATGCGCACTCACTCTGGAGAAGAGCCATTCAAATGTGATATTTGCGAAAAAAGTTACACCACCAATCAGTCTTTGAAAAGCCATTTGCTAGCTCACAGTGGAGAAAAGCCATTCAAATGTGATATTTGCGAAAAAAGTTTCATCACTAATCAGTATTTGAAAGGCCATTTGCTAACTCACAGTGGAGAAAATCCTATCAAAtgtgatatttgcaaaaaaagttACACCACCAATAAGTCTTTGAAAAGTCATTTGCTAACTCACACTGGAGAAAAGCCTTTCAAATGTGATATTTGCGAAAAAAAATTCACCACTAATCATTCTTTGAAAAGCCATTTGCTAAGTCACAGTGGAGAAAATCCTATCAAATGTGATATTTGCGAAAAAAGTTTCACCACCAATCAGACTTTGAAAAACCATTTGCTAACTCACGCTGGAGAAAAGCCTTTCAAATGTGATATATGCGAAAAAAGTTTCATCACTAATCATTCTTTGAAAAGCCATTTGCTAGCTCACATTGGAGAAAAGCCATTCAAATGTAATATTTGCGAAAAAAGTTTCACCACCAATCAGTCTTTGAAAAACCATTTGCTAACTTACACTGGAGAAAAGCCTTTCAAATGTGATATATGCGAAAAAAGTTTCGTCACTAATCAGTATTTGAAAGGCCATTTGCTAACTCACAGTGGAAAAAATCCTATCAAATGTGATATTTGCGAAAAAAGTTACACCACCAGTCGGTCTTTAAAAAACCATTTGCTAATTCACACTGGAGAAAAGCCTTTCAAATGTGATATTTGCGAAAAAAGTTTCATTACTAATCAGTCTTTGAAAAGCCATTTGCTAGCTCACAGTGGAGAAAAGCCATTCAAATGTGACATATGCAAAAAAAGTTACACTACTAAGCAGTCTTTGAAAGATCATTTACTCTCTCACACTGGAATGAAACCATTTAAATGTCATTATTGCGCAAAAAGTTTTTACTGTAAGTCGGATTTGCAACGGCATAAGCTCATTCATTCCTGA
- Protein Sequence
- MEVFENSENKVFDIKLVDFPFICRICLRRGDLRLFEDEDYLLDLFVTITKIDVRSTVNFPRNICNECINKLKDISLFIEISKFDDATRQQKKEIENDDEVTLQTSQGRVVKTKKSTEEEEDIYNEGFEVCRICLLTSCLTPFREQKHLMELFHNITNIDVDSTVNLPRNICNACINKLEDISLFIDISKYNAAESLIPKKENESEAIVSCETSQSDIVVRTEKTTTKEDDINVEGFDICRICSLTSCLTPFEEKAHLMQLFQNITNIDVRAETSFSKRNSICNKCITELEKILLFISVSFYNDMKLKNTVGGNEVLKTKDYLEKTAVDASKYMKFESISDRNEVKVENNSSESSCCYESKDLHAVFDIKEDPETSVRGNTQDSLALCSETDTVEKPLGGEKPFKCDCCEENFSRKEYLKKHMRTHSGEEPFKCDICEKSYTTNQSLKSHLLAHSGEKPFKCDICEKSFITNQYLKGHLLTHSGENPIKCDICKKSYTTNKSLKSHLLTHTGEKPFKCDICEKKFTTNHSLKSHLLSHSGENPIKCDICEKSFTTNQTLKNHLLTHAGEKPFKCDICEKSFITNHSLKSHLLAHIGEKPFKCNICEKSFTTNQSLKNHLLTYTGEKPFKCDICEKSFVTNQYLKGHLLTHSGKNPIKCDICEKSYTTSRSLKNHLLIHTGEKPFKCDICEKSFITNQSLKSHLLAHSGEKPFKCDICKKSYTTKQSLKDHLLSHTGMKPFKCHYCAKSFYCKSDLQRHKLIHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -