Basic Information

Insect: Chrysolina haemoptera
Gene Symbol: -
Assembly: GCA_958298965.1
Location: OY282590.1:27872951-27883017[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00047 0.073 15.3 1.4 2 23 416 437 415 437 0.97

2 18 0.0025 0.38 13.0 3.8 1 23 443 465 443 465 0.99

3 18 5.1e-06 0.00079 21.5 6.8 1 23 471 493 471 493 0.98

4 18 9e-06 0.0014 20.7 0.3 1 23 499 522 499 522 0.95

5 18 0.023 3.5 10.0 0.6 1 23 531 553 531 553 0.99

6 18 6.7e-06 0.001 21.1 1.0 1 23 559 581 559 581 0.98

7 18 0.0022 0.34 13.1 1.9 2 23 588 609 587 609 0.98

8 18 0.0015 0.23 13.7 2.8 1 23 616 638 616 638 0.99

9 18 0.11 17 7.8 0.2 1 21 644 664 644 665 0.93

10 18 4.7e-06 0.00073 21.6 6.2 1 23 674 696 674 696 0.98

11 18 0.0019 0.29 13.4 0.7 2 23 703 724 702 724 0.97

12 18 3.9e-05 0.006 18.7 3.6 1 23 730 752 730 752 0.98

13 18 9.6e-07 0.00015 23.7 3.0 1 23 758 780 758 780 0.98

14 18 0.0016 0.24 13.6 1.3 1 23 786 808 786 808 0.97

15 18 2e-06 0.0003 22.8 1.1 1 23 814 836 814 836 0.99

16 18 0.0043 0.66 12.3 0.9 1 23 842 864 842 864 0.98

17 18 0.017 2.6 10.4 0.1 1 23 870 893 870 893 0.96

18 18 0.0032 0.49 12.7 1.1 3 23 900 921 898 921 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00047	0.073	15.3	1.4	2	23	416	437	415	437	0.97
2	18	0.0025	0.38	13.0	3.8	1	23	443	465	443	465	0.99
3	18	5.1e-06	0.00079	21.5	6.8	1	23	471	493	471	493	0.98
4	18	9e-06	0.0014	20.7	0.3	1	23	499	522	499	522	0.95
5	18	0.023	3.5	10.0	0.6	1	23	531	553	531	553	0.99
6	18	6.7e-06	0.001	21.1	1.0	1	23	559	581	559	581	0.98
7	18	0.0022	0.34	13.1	1.9	2	23	588	609	587	609	0.98
8	18	0.0015	0.23	13.7	2.8	1	23	616	638	616	638	0.99
9	18	0.11	17	7.8	0.2	1	21	644	664	644	665	0.93
10	18	4.7e-06	0.00073	21.6	6.2	1	23	674	696	674	696	0.98
11	18	0.0019	0.29	13.4	0.7	2	23	703	724	702	724	0.97
12	18	3.9e-05	0.006	18.7	3.6	1	23	730	752	730	752	0.98
13	18	9.6e-07	0.00015	23.7	3.0	1	23	758	780	758	780	0.98
14	18	0.0016	0.24	13.6	1.3	1	23	786	808	786	808	0.97
15	18	2e-06	0.0003	22.8	1.1	1	23	814	836	814	836	0.99
16	18	0.0043	0.66	12.3	0.9	1	23	842	864	842	864	0.98
17	18	0.017	2.6	10.4	0.1	1	23	870	893	870	893	0.96
18	18	0.0032	0.49	12.7	1.1	3	23	900	921	898	921	0.94

Sequence Information

Coding Sequence: ATGGAAGGGCGTCTGTTCCTTGAAGATTTTTCATCCATTTGTAGAATCTGCTTAATAGGAACCGGCTTGACATCTCTTACTgaaaagaaatatttatcagatatttTCACGTCCATAACTGATATTCAGgttGAACCTCAAGAtggttttccaaaaaatatatgCAGCGACTGCATTGGCAAAATTGAAGACATATCAAGATTGATTGATATGTCAAAGTCTAACAACATAGGTTTCTTACGAGACTTGGTAAAAGAAGAAGAACAGGAAGAATTTCATTCACAACTTGAaagtgaaataataattatagacgACGGTACTTCAATAAAGATTGAGGAAAACAGGGAATTAGAtgatcaaatgaaaaatatacatggCCCAATTTGtggcaaaacaaatgaatctaaacagaaaatcaaaaagaaaaatggTGAACAGCCTGTCAGACAAAAATATACAGATATATTTCCATATGTTTGCCGAATTTGtcgggaaaaaaataatttggggGCTTTCACTGAACACAAGCATTTGATAGATGTTTTCCAAAACATAACTAATTTAGAGGTCTCTTTCGAAGACAGTCTCCCAAAAAATGTCTGCCGTGATTGTATTCAGAAACTTCAGAATATTTCAGACCTTATTGAACTATCAAAGTCCAACAATATAAAGCTTCAACATATCTTATCGAGTCACCAAAATGGTCTaggattgaaaaaatttaacaaaatggCAACAATCAATATTCTTAATGAAATCAAAGTTGGAGTTGACGGCATCACAGAAACAAAATCTGATTTCATAAACGAAGAACTTGAGGGAGCTATTGATAAGGGAGGACAAGATCACTCGGACTCTGACAACCAAGATTCAGTAGATGCTTCCAAAGATAGTGCTGATCAAGAAAACCAACCAAATATTTGCACAGAAGGTGATAATTGTGACAACTCAAAGAGACGTCTGTTGATTCATCTGAAGAGAGATCAAATAGGAAACAATGGGCGGAGAATATGGAAGAATTTTTCTTCATCATCCAAGAAAACGCTTATGGAGGCTCAGCCTATTAATAGGCAAAAAGATCACCAACTCAAGACTGTCATAGTTGTTTTAATTAAAGAAAAGTGGATTTCTGACATGGCGAGTTTAATTGTGGATGAACAAAGTGGAGTGAAGATGTCTTCTGAAAGTACTGCCACAAAAACAAGCTTGACTCCATCTAGCCTATTTTACACCAAACCTTCATTACAGTGCACAATCTGTTTGGAAAAATTCTATTATCAACATAAATTGGCTGCTCACATGAAAATCCATGCTGATGACCTACCATATCGTTGCGAAATGTGTGCAAACAGTTACAAGCATAAGAAAAGCTTGCTGAAACACTTGAACTCACACAACCGTTCGAAACCTTTTGAGTGTCACACTTGCCACAAAAAGTTTTCTAGAAATAGCTATTTGACGAATCATGTGAGAATACACACTGGGGAACGACCGTTCAAGTGCCCAATTTGCCCACAGACGTTTACCCAGCCAGCATCATTGAGTGAACACCATAATGAAATCCACTCAAAGGAGACTGATGAAAGGAGTTTTCAATGTTCCATTTGTCTTAGTTATTATCCGACCAATGATAGACTTATGCTACATATTAAAACCCATTCTAATGTAAAAAACTTCAATTGCTCTCTTTGTCCTAAGACCTTCATTATGGAATCTTATTTGAGAAGACATATAAAAATGCACACTCCAAAAGATCTTGTCCAGTGCCACTTATGTTCGAAATCTTTCGGTAAGGGGGTCAACATTACCCGTCATTTGAAAACTCATACTGCAAGAGAAAGAGCATTCAAGTGTACGGTGTGTTTGAAAGGATACCGTTCAAAAGCCTGCCTGTCCTCGCACCTGCTGACTCACCGGGTTGAACGGTCTTTCAAATGTTCGGTGTGTTCGTTGggttttccgttagcaaaatactTGAAACTTCATGAGCAGCGTTGTAATCTAAAACGAGAGAAATCCCATCAATGTACATTTTGTCCTAAACGGTTTTACCATCCTTCCGATTTGAGAAATCATCAAAGAACCCACAAAGGAGTTAAGAGAGTCGAGTGCAAGTTCTGTTCAAAACGTTTCTTCTATGAGAGTGAGATGTTGATTCATCTTCGTGTGCATACTGGAGAAAAGCCTTTTTCATGTACGCTCTGTTCCAAAAGTTTCTCCCAGAAGATGACTCTTATGCATCATTTGAACGTGCATACAGGCGTAAAACCATTCGAATGTGCGGAATGTCAGAAGCGCTTCAGCAAAAAGTCCCACTTGAAAGTCCACCTGAGAGTTCACACTGGAGAGAAACCTTATCAGTGTAATGTTTGTTTTAGAAGTTTTGCTCACGATAACACCCTTAGACTTCACCTCGGTGTACATTCAGAAATTAAACAATACAAGTGCACTGTATGTTCCAGAGCGTTTTCTGCTCCTACACACTTGAAAGTTCACATGAGAATACATAccggtgaaaaaccatttgaatgtACTATTTGCCCAAGTGCCTTTGCTCATCGCCTAACATGGCAAAGGCATTTGAGCCGCCACAGGGGAGAAAAACCATATATTTGTGCCATTTGCTCAAAAGGCTTTGTGATAAAGCCCGACCTAGCCGCTCATTTCAACAGTAAGCACAGACAAGTTGAATCTCACTGTGATATTTGCTCAAGATCATTTCCTAAAGTGGGAAATTTGAGAATACATAAAAGCAGAGCACATTCCAAAAAGGCTAATCGAAAGAGATGA
Protein Sequence: MEGRLFLEDFSSICRICLIGTGLTSLTEKKYLSDIFTSITDIQVEPQDGFPKNICSDCIGKIEDISRLIDMSKSNNIGFLRDLVKEEEQEEFHSQLESEIIIIDDGTSIKIEENRELDDQMKNIHGPICGKTNESKQKIKKKNGEQPVRQKYTDIFPYVCRICREKNNLGAFTEHKHLIDVFQNITNLEVSFEDSLPKNVCRDCIQKLQNISDLIELSKSNNIKLQHILSSHQNGLGLKKFNKMATINILNEIKVGVDGITETKSDFINEELEGAIDKGGQDHSDSDNQDSVDASKDSADQENQPNICTEGDNCDNSKRRLLIHLKRDQIGNNGRRIWKNFSSSSKKTLMEAQPINRQKDHQLKTVIVVLIKEKWISDMASLIVDEQSGVKMSSESTATKTSLTPSSLFYTKPSLQCTICLEKFYYQHKLAAHMKIHADDLPYRCEMCANSYKHKKSLLKHLNSHNRSKPFECHTCHKKFSRNSYLTNHVRIHTGERPFKCPICPQTFTQPASLSEHHNEIHSKETDERSFQCSICLSYYPTNDRLMLHIKTHSNVKNFNCSLCPKTFIMESYLRRHIKMHTPKDLVQCHLCSKSFGKGVNITRHLKTHTARERAFKCTVCLKGYRSKACLSSHLLTHRVERSFKCSVCSLGFPLAKYLKLHEQRCNLKREKSHQCTFCPKRFYHPSDLRNHQRTHKGVKRVECKFCSKRFFYESEMLIHLRVHTGEKPFSCTLCSKSFSQKMTLMHHLNVHTGVKPFECAECQKRFSKKSHLKVHLRVHTGEKPYQCNVCFRSFAHDNTLRLHLGVHSEIKQYKCTVCSRAFSAPTHLKVHMRIHTGEKPFECTICPSAFAHRLTWQRHLSRHRGEKPYICAICSKGFVIKPDLAAHFNSKHRQVESHCDICSRSFPKVGNLRIHKSRAHSKKANRKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -