Basic Information

Insect: Chrysolina haemoptera
Gene Symbol: RGM1
Assembly: GCA_958298965.1
Location: OY282588.1:628301-631590[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.0061 0.94 11.8 0.4 2 23 172 193 171 193 0.95

2 24 0.00093 0.14 14.3 5.0 1 23 199 221 199 221 0.97

3 24 5.1e-06 0.00078 21.5 2.1 1 23 226 249 226 249 0.98

4 24 0.0021 0.33 13.2 2.3 1 23 277 299 277 299 0.97

5 24 0.23 36 6.8 11.7 1 23 305 327 305 327 0.98

6 24 0.01 1.6 11.1 2.0 1 23 333 355 333 355 0.98

7 24 5.5e-05 0.0085 18.2 2.9 1 23 361 383 361 383 0.98

8 24 0.00045 0.069 15.3 2.5 1 23 389 411 389 411 0.99

9 24 3e-05 0.0046 19.0 3.4 1 23 417 439 417 439 0.99

10 24 0.00014 0.021 17.0 3.6 1 23 443 465 443 465 0.95

11 24 0.13 19 7.6 0.9 1 19 471 489 471 491 0.90

12 24 0.0013 0.19 13.9 2.2 1 23 537 559 537 559 0.97

13 24 0.00032 0.049 15.8 1.1 1 20 565 584 565 586 0.95

14 24 0.00011 0.018 17.2 1.3 2 23 587 608 586 608 0.97

15 24 0.00012 0.019 17.1 2.0 1 23 614 636 614 636 0.98

16 24 0.00015 0.023 16.8 0.9 2 23 643 664 642 664 0.97

17 24 0.058 8.9 8.7 6.2 1 20 670 689 670 691 0.94

18 24 4.7e-06 0.00072 21.6 1.1 2 23 692 713 691 713 0.97

19 24 0.00065 0.1 14.8 5.0 1 23 719 741 719 741 0.98

20 24 0.00019 0.029 16.5 1.6 1 23 746 768 746 768 0.98

21 24 0.00044 0.068 15.4 5.0 1 23 774 796 774 796 0.99

22 24 0.00041 0.062 15.5 0.6 2 23 801 822 800 822 0.97

23 24 0.0028 0.43 12.8 3.1 2 23 829 850 828 850 0.97

24 24 0.077 12 8.3 5.0 2 23 863 884 862 884 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.0061	0.94	11.8	0.4	2	23	172	193	171	193	0.95
2	24	0.00093	0.14	14.3	5.0	1	23	199	221	199	221	0.97
3	24	5.1e-06	0.00078	21.5	2.1	1	23	226	249	226	249	0.98
4	24	0.0021	0.33	13.2	2.3	1	23	277	299	277	299	0.97
5	24	0.23	36	6.8	11.7	1	23	305	327	305	327	0.98
6	24	0.01	1.6	11.1	2.0	1	23	333	355	333	355	0.98
7	24	5.5e-05	0.0085	18.2	2.9	1	23	361	383	361	383	0.98
8	24	0.00045	0.069	15.3	2.5	1	23	389	411	389	411	0.99
9	24	3e-05	0.0046	19.0	3.4	1	23	417	439	417	439	0.99
10	24	0.00014	0.021	17.0	3.6	1	23	443	465	443	465	0.95
11	24	0.13	19	7.6	0.9	1	19	471	489	471	491	0.90
12	24	0.0013	0.19	13.9	2.2	1	23	537	559	537	559	0.97
13	24	0.00032	0.049	15.8	1.1	1	20	565	584	565	586	0.95
14	24	0.00011	0.018	17.2	1.3	2	23	587	608	586	608	0.97
15	24	0.00012	0.019	17.1	2.0	1	23	614	636	614	636	0.98
16	24	0.00015	0.023	16.8	0.9	2	23	643	664	642	664	0.97
17	24	0.058	8.9	8.7	6.2	1	20	670	689	670	691	0.94
18	24	4.7e-06	0.00072	21.6	1.1	2	23	692	713	691	713	0.97
19	24	0.00065	0.1	14.8	5.0	1	23	719	741	719	741	0.98
20	24	0.00019	0.029	16.5	1.6	1	23	746	768	746	768	0.98
21	24	0.00044	0.068	15.4	5.0	1	23	774	796	774	796	0.99
22	24	0.00041	0.062	15.5	0.6	2	23	801	822	800	822	0.97
23	24	0.0028	0.43	12.8	3.1	2	23	829	850	828	850	0.97
24	24	0.077	12	8.3	5.0	2	23	863	884	862	884	0.97

Sequence Information

Coding Sequence: atggaaTCCGAATGTTCTGAATTGTACAATTTAAAAAACCAGAAAATTGATAATGGAACAAGACAAGGTAGGAATGTAGAAGACCATATTTCCAATGAGACTCTAAATATCGAAATGGTGAAACTTGAGCCAAGtgaatttcatttgttcaataattCAGAAAAGTTTGATGGATCAAAACAAACAAACTTTGTGAATGAGGGGCAACTCCTGCAAAACGAAGAAAAACTACAAGATATCTGCCAAAACACGCTAATGGATCAGACTTGTTTAGATATCAAAGGAGATATTGAGTGCAAACAAGAAGGAAAACCTTGTGAAGTGGCTTGTATATGTGAAGAAAAATGTGCCATAAGAGATGAGAATCACTTCATATTgaatgatgatttttcgacgAATACTGAGAGTCAAGTGATGCTTATCAAAAATGAGGATGACATTGACATTATTCATGAAGATATAAAACCCACAATAACTGAAGAGGAAACAAGCAAATGCAAAACTATTTCTCTGCAATGTCGGTATTGCAAAGAATATTTTATATCTGATAGTGAACTAACAGCCCATGAAAAAGATCATCCAGGAAGAAGGATATTTGCATGCAAACTCTGCTTTAAATCTTTCAAATCACATAGATCTCTGAAAACTCACGAGTTGACTCATGAAAAAAAGCCATTTCAGTgcgaaatttgttcaaaatctttcaccCGTATTGCTAATCTAAATATTCATCATAAGAGACTTCACACAGAAAAAAGACGGTATCGGTACCCCACAACAGGTAGTGTTTGCAAATCCCGTGAGGCAATTCCGGAAAGCAAGAAGCCCTTTCAGTGTAAAATCTgcttaaaactttttttttcctggcgTCATTTGAGAGTCCATGAAAGTATTCATTCAAAAGAAAAACCCTTTCAATGTAAGATCTGTTTGAAATGTTTCCATCACAAGAATGTTCTGAAACGTCACGAACATACTCACGAAGCTAAGCAACCTTATCAGTGTAAAATCTGCTTAAAATCTCTCAGCTCCAAGCGTTATTTGATATTCCACGAGAGGACCCATACTGGAAAAAAGTCATTTCAATGCAAGACATGCTCTAAATCTTTCTATACCAGTCTTAGTTTGAAACGCCACGAGAATATCCATAAAGAGGACAATCTATATCGATGTCAAGTCTGTTCAAAGTCACTACAAtccaaatattatttgaaactaCACCAAAAAATTCATAGTGGAGAAAAACCCTATCAATGCAAAGTGTGTTTGAAATCTTTCTCTCATAATATGGGTTTGAAACGTCATGAGCAAACCCATGTGAAGCAATttctttgtaaaatttgctCGAAATCATTCAGGTACAGTCATACTTTGAAAGTTCACGAGAAAATCCACACCGAGGAAGAAACATTTCAGTGCAAAATTTGCTTGAAATCCTTCTTTAGCATCGATAGTATGAAAGGCCATGAGCATTTAAAACGTGAAATCGTCCCAGAATCTGCGGATGCCGATGGTGAAAAATCTTTGAAGTGTGAATtctgtttgaaaactttttattgcAGTAGACATATGAAACGTAATGCAGATATTCTTGAAGAGGATAAGCCTCATCCCTGTAATACGTGCTCGTTGATTTTCAACAGCAAGCAGCATCTGATAATCCACGAAAGGGTTCATACTGGTGAAAAACCCTTCCAGTGTGAGGTCTGTTTGAAAAAGTTCCCGTTTAGTTATAATTTGAAACGCCATGTGCATCTACAATGCAAGGTCTGCTCGAAGTATTTCAACTCTCAGCGTTATTTAACAGTTCATGAAAGAATTCATACAGATGAAAGACCCTTTCAGTGTAAGATCTGCTTGAAGTCTTTCTTCAATGAACAGACTTTGAAACGCCACGAGAATATTCATGGCGACGAGAGTAAATCTCAATGTGACGTATGCTTGAAGTCGTTTAGCTCGATGAATTATTTGAGAGTGCACAGGAGAATTCATACAGGGAAAAACTTATATCAGTGTAAAATTTGCTTCAAGTCTTTCTCCTGCCGTAATAATTTCAAACGCCACGAGCACATAAAATGTGAAGTCTGCTCCAAATCTTTCAACTCGAGAAATTATTTGAGAGTCCACCAGAGGGTTCACacaaaagaaaaatcatttcaatgtaCAACCTGTTTGAAATCTTTCTTCCAGAGTCATACTCTAAAACGCCACGAGCAAATTCACGAGAGGAAACCTTTTCAGTGTAACGTTTGCTCGAAGTATTTCAACTCCAGAAATTATTTGAGCATTCACGAAAGAATTCATAATGGAGAAAAGGCGTATCAATGCAAAGTCTGCAAGAAATCTTACTCTTGCAGTAGTAGTTTGAATCGCCATGAGCAAACTCacgaagaaaatataaaatgtaaaatCTGCTTGAAGTTTTTTGACACCAAAATTGATTTAAGAGTTCATGAGAAGGTTCATACAAAAGAAGAAGCGATTCAGTGCAAAATCTGTTTGAAATCGTTCGACTATGAGTGTAGATTGAAACGTCATTTGAAGATTCATGtccttgaaaaaattcataaaaaaaaagaatcaatTCAGTGCAAATTCTGTTTGAAATCTTTCAATTTCCAGTGTAGATTGAATCTCCATTTGAAGTCTCATACTGGAGAAGGAGTCTCTCCCAAATCTCCGTCTTAA
Protein Sequence: MESECSELYNLKNQKIDNGTRQGRNVEDHISNETLNIEMVKLEPSEFHLFNNSEKFDGSKQTNFVNEGQLLQNEEKLQDICQNTLMDQTCLDIKGDIECKQEGKPCEVACICEEKCAIRDENHFILNDDFSTNTESQVMLIKNEDDIDIIHEDIKPTITEEETSKCKTISLQCRYCKEYFISDSELTAHEKDHPGRRIFACKLCFKSFKSHRSLKTHELTHEKKPFQCEICSKSFTRIANLNIHHKRLHTEKRRYRYPTTGSVCKSREAIPESKKPFQCKICLKLFFSWRHLRVHESIHSKEKPFQCKICLKCFHHKNVLKRHEHTHEAKQPYQCKICLKSLSSKRYLIFHERTHTGKKSFQCKTCSKSFYTSLSLKRHENIHKEDNLYRCQVCSKSLQSKYYLKLHQKIHSGEKPYQCKVCLKSFSHNMGLKRHEQTHVKQFLCKICSKSFRYSHTLKVHEKIHTEEETFQCKICLKSFFSIDSMKGHEHLKREIVPESADADGEKSLKCEFCLKTFYCSRHMKRNADILEEDKPHPCNTCSLIFNSKQHLIIHERVHTGEKPFQCEVCLKKFPFSYNLKRHVHLQCKVCSKYFNSQRYLTVHERIHTDERPFQCKICLKSFFNEQTLKRHENIHGDESKSQCDVCLKSFSSMNYLRVHRRIHTGKNLYQCKICFKSFSCRNNFKRHEHIKCEVCSKSFNSRNYLRVHQRVHTKEKSFQCTTCLKSFFQSHTLKRHEQIHERKPFQCNVCSKYFNSRNYLSIHERIHNGEKAYQCKVCKKSYSCSSSLNRHEQTHEENIKCKICLKFFDTKIDLRVHEKVHTKEEAIQCKICLKSFDYECRLKRHLKIHVLEKIHKKKESIQCKFCLKSFNFQCRLNLHLKSHTGEGVSPKSPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -