Basic Information

Insect: Chrysolina haemoptera
Gene Symbol: -
Assembly: GCA_958298965.1
Location: OY282589.1:37899793-37906930[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.003 0.45 12.8 2.3 3 23 147 167 145 167 0.97

2 16 0.0038 0.57 12.4 2.3 3 23 175 195 174 195 0.96

3 16 0.0078 1.2 11.5 0.3 1 23 202 224 202 224 0.95

4 16 0.00099 0.15 14.3 0.8 1 23 325 347 325 347 0.98

5 16 4.4e-07 6.8e-05 24.8 5.2 2 23 354 375 353 375 0.98

6 16 7.1e-05 0.011 17.9 2.8 2 23 399 421 398 421 0.96

7 16 4.7e-05 0.0072 18.4 1.8 2 23 526 547 525 547 0.96

8 16 0.004 0.62 12.3 0.9 1 23 553 576 553 576 0.92

9 16 2.1e-06 0.00032 22.7 0.8 1 23 581 603 581 603 0.98

10 16 9.7e-06 0.0015 20.6 2.2 2 23 614 635 613 635 0.97

11 16 8.9e-08 1.4e-05 27.0 1.4 1 23 642 664 642 664 0.98

12 16 3.8e-05 0.0058 18.7 1.6 3 23 676 696 674 696 0.92

13 16 0.00012 0.018 17.2 4.6 1 23 702 724 702 724 0.99

14 16 5.2e-05 0.008 18.3 1.7 1 23 730 752 730 752 0.96

15 16 8e-07 0.00012 24.0 0.4 1 23 758 780 758 780 0.99

16 16 0.00018 0.028 16.6 0.1 1 23 786 810 786 810 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.003	0.45	12.8	2.3	3	23	147	167	145	167	0.97
2	16	0.0038	0.57	12.4	2.3	3	23	175	195	174	195	0.96
3	16	0.0078	1.2	11.5	0.3	1	23	202	224	202	224	0.95
4	16	0.00099	0.15	14.3	0.8	1	23	325	347	325	347	0.98
5	16	4.4e-07	6.8e-05	24.8	5.2	2	23	354	375	353	375	0.98
6	16	7.1e-05	0.011	17.9	2.8	2	23	399	421	398	421	0.96
7	16	4.7e-05	0.0072	18.4	1.8	2	23	526	547	525	547	0.96
8	16	0.004	0.62	12.3	0.9	1	23	553	576	553	576	0.92
9	16	2.1e-06	0.00032	22.7	0.8	1	23	581	603	581	603	0.98
10	16	9.7e-06	0.0015	20.6	2.2	2	23	614	635	613	635	0.97
11	16	8.9e-08	1.4e-05	27.0	1.4	1	23	642	664	642	664	0.98
12	16	3.8e-05	0.0058	18.7	1.6	3	23	676	696	674	696	0.92
13	16	0.00012	0.018	17.2	4.6	1	23	702	724	702	724	0.99
14	16	5.2e-05	0.008	18.3	1.7	1	23	730	752	730	752	0.96
15	16	8e-07	0.00012	24.0	0.4	1	23	758	780	758	780	0.99
16	16	0.00018	0.028	16.6	0.1	1	23	786	810	786	810	0.93

Sequence Information

Coding Sequence: atgatcaaTAAAGAAGTTGAGCTCATGATAGACAAAATATGTAGATGTTGCATgtgtgaaaatgaaaatatgcacAATATGTTCGAAAACAAAGGTGGTTCAGATGAGCCAACGATACTCCTATCTGATATGTTGGTGGCTTGTGCTTCTATTGAGGTTGTTTCGGGTGATGGGTTGCCAAATAATTTATGCGAAGCTTgtgaagaaaaattgaaaaacttgtaCGAGTTCAGAACACAATGTCAGAAATCAGACTCTGCACTCAGAGGATTAACgcatatagaaaataaaaaagatgcCCCAAGTCAGGAAGAGGATATTATAATAGAACCTGATACGCCTGATGCGCTTTTTGATGACGAGGATGATTTACCTCTGTTGAAAAGAGGGCAAAAGAGGAAGCGGGGTAGACCAAAGAAAACACCAGATAGCTTGGCTTGCacatattgtaaaaaaatattacatactAAAAAGGGGTTGAGAGTTCATTTACGATCACACACTGGGGAGAAACTGCGATATTGCTTATTCTGCGATGCTAAATACACACGCACAAACCATTTGATCCGCCATATCAGCACTCACGATAAACCTGGCTTGAAACATCCTTGTGAAAGCTGTGATAAGGTATTTGACGCAGCTGCTGACTTATACAAACACTCCAAGGAACATGAAGAAGTGGCAGATGGTAAAGAAGAGCAGTCGAttaaaattgaaactgaagagATCAAAACAGAAGACTTGATTGAAGCTGAAGTTACAGATCAAGTTGATAAAACTACCACACCAGATGCTGAGCCCAATGACCAAATGTTTCTTAGTGACTTGCCAATGAGTGACGGCGATGACCTAGGTGATGGCAATGACCGAGGTGATAGTGATGAAGATTTTGTATTTGAAGATGCTTTAGATAAAGagataaaatccaaaaaaaagaaGGATCGCACTAAGGGAACTGATGACAAAGCATCATTTGAATGTAAAGAATGCACTAAAATCATGACAACATATATTGGACTCAAAATTCATATGAGGAGACATACAGGAGCTGATTTATCCACTTGTAAGCTTTGTAATAAATCCTTCACGAAAAATAGCCATTTGGTGAGGCATATGAGAACACACGGTGTTGTTGAGTCTGATGAGGCAAAAGCCCTTAAAAAGATCGCCGATTCAAAAGATAAAAAAGTTATGGAATGTGATTATTGCGATCGTAAATTCAAGTATAAGAAAAGTTTTGTGCATCACATGCAAGTGGAACATGGAATGTCAGATTTGGATAGTGATGGTGACAAATCAGCTAGCCCAAAGAAACTGAAGaatgaaaaagtagaaaatGAAGGAGAAATTGAAGCTGTGCAAATGAAAGGTTTCAACACCTGCGACTCTACAATTATTAGCGTTAGCAATAATGATATTCCTTCAGCAGGTGCGTCAGTTCAACTCACCGACCTTCCCTTAGATATCGATTCCAATCACAAAGTGGAATTCGATCCGTCTATGACAGAAGAAGAGGAACTCAATATTCCCGATGCTGAAAATTTGTTCGTCAAAAAAACTCGAGGCAAAAATCAAGTGTGCCATGTTTGTGGTGCGTCATTCGCCAGGGTCAATCACTTGACACGCCACATGACCTTGCATCGTGCTCTTCTGATATTTCATTGTGGTCGATGTGAGAAAGCATATGCGACCGAAGACCACCTCAAGATACACGTGGAGGAGGAGCATATTAACAAACCGTACGTTTGCACAGTTTGTAACAAGCCTTTCAGCAGGGGAGAGCACTTGATAAGGCATTTGAAAGTGCATCAGAACAATGCCGACAAAGAAGCAAATTTGAAGTGTTCCATCTGCGATTCAACGTTTACCAGATCTGACCATCTGGCTCGCCACACGAAAGTTCATCTCTTGCAGGACAAACGCCATGTCTGCGGGGAATGCGGCAAGGCCTTCAATCGCCTGGACAACTTGAAGACTCACCAAAGGACTCACACCGGAGAGAAAGACACCTCGAAATtacatttatgcatttattgtgGAAAGGAATTCAATAATTCCAGTAACATGATTGTCCACATGAGGCGTCATACTGGAGAGCGGCCATATAAATGCACCGAATGCGGCAAGGGTTTCCCAAGATCGCATGATTTGAAGTGCCATGAGCGTACGCACTCTGGGGAAAAACCTTACTTATGTACGCTGTGTGGAAAATCTTTCAATAAAAGTAACAAACTGTTGCGTCACAGCCGCGTTCACACAGGCGAACGCCCCTACGTATGCAATATTTGCAGTCGCGCGTTCACCCAATCCAACGATTTGGCGCTGCACATGCGCAGACACACGGGAGCGCGACCGTACGCGTGCGGTGTGTGCCCTGCTCGCTTCAtccaatccgggcagctgaaaACTCACCGCAGAACAACGGGGCACTGGATGGAGACGCAACCGGACCTCAAAGGGGGACACAGAGTGGAACCGGTGACTCCTGCTCACGAACCTGTGCCTATCAGGTTCAAGGTGCACAGaGTTCTAAAAAAAGAAGAGACAATCGAGCCTCCCGTCATCAACCAGCCCCAAACCCAAACCTCTGCCACTGGAGACGTGACAATGGAGGAAATGCAAACTATGCAGTCGGAACCTCAACGAATTCTCATGGGCATCATGGGCAACATCAAAATACCCGGCGAAGATGCCGTTCAACCCCTCCTCATCGATGCTGCGAAGCTCGCGGAGCTCCACGGAGCTGGATTGGTCAATCTTCCCTCGGTCATACAAACCACCAATGGCGACGAGATCAAACTGAAGTCGGAAGTGGGAAGTTTCACCATATCCCATTGCGACGGCGAGCTGGAGAAGCAGGGCGAGAGTGCTGGTAGTTCGTTTCAAGACGGGGTGGTGATTTATTCGAACGTGGGCCATACTTCGACGACGTATACTACTAGCGAAACCTTCAACTACCAGAATTACCATTAA
Protein Sequence: MINKEVELMIDKICRCCMCENENMHNMFENKGGSDEPTILLSDMLVACASIEVVSGDGLPNNLCEACEEKLKNLYEFRTQCQKSDSALRGLTHIENKKDAPSQEEDIIIEPDTPDALFDDEDDLPLLKRGQKRKRGRPKKTPDSLACTYCKKILHTKKGLRVHLRSHTGEKLRYCLFCDAKYTRTNHLIRHISTHDKPGLKHPCESCDKVFDAAADLYKHSKEHEEVADGKEEQSIKIETEEIKTEDLIEAEVTDQVDKTTTPDAEPNDQMFLSDLPMSDGDDLGDGNDRGDSDEDFVFEDALDKEIKSKKKKDRTKGTDDKASFECKECTKIMTTYIGLKIHMRRHTGADLSTCKLCNKSFTKNSHLVRHMRTHGVVESDEAKALKKIADSKDKKVMECDYCDRKFKYKKSFVHHMQVEHGMSDLDSDGDKSASPKKLKNEKVENEGEIEAVQMKGFNTCDSTIISVSNNDIPSAGASVQLTDLPLDIDSNHKVEFDPSMTEEEELNIPDAENLFVKKTRGKNQVCHVCGASFARVNHLTRHMTLHRALLIFHCGRCEKAYATEDHLKIHVEEEHINKPYVCTVCNKPFSRGEHLIRHLKVHQNNADKEANLKCSICDSTFTRSDHLARHTKVHLLQDKRHVCGECGKAFNRLDNLKTHQRTHTGEKDTSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCTECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICSRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKTHRRTTGHWMETQPDLKGGHRVEPVTPAHEPVPIRFKVHRVLKKEETIEPPVINQPQTQTSATGDVTMEEMQTMQSEPQRILMGIMGNIKIPGEDAVQPLLIDAAKLAELHGAGLVNLPSVIQTTNGDEIKLKSEVGSFTISHCDGELEKQGESAGSSFQDGVVIYSNVGHTSTTYTTSETFNYQNYH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00755958;
90% Identity: -
80% Identity: -