Chae036325.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysolina haemoptera
Gene Symbol
-
Assembly
GCA_958298965.1
Location
OY282593.1:28062388-28064874[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.4e-07 2.2e-05 26.4 2.6 1 23 307 329 307 329 0.99
2 16 1.8e-05 0.0028 19.7 2.0 1 23 335 357 335 357 0.99
3 16 0.0039 0.6 12.4 0.9 1 23 363 385 363 385 0.98
4 16 2.9e-05 0.0044 19.1 4.4 1 23 391 413 391 413 0.98
5 16 0.00035 0.054 15.7 1.6 1 23 419 441 419 441 0.97
6 16 0.00048 0.074 15.3 0.7 1 23 447 469 447 469 0.98
7 16 4e-06 0.00062 21.8 1.7 1 23 475 497 475 497 0.98
8 16 0.0058 0.89 11.8 5.4 1 23 505 527 505 527 0.97
9 16 1.3e-05 0.002 20.2 1.0 1 23 533 555 533 555 0.97
10 16 3.5e-06 0.00054 22.0 2.7 1 23 561 583 561 583 0.98
11 16 0.0039 0.6 12.4 10.5 1 23 589 611 589 611 0.98
12 16 0.0002 0.031 16.4 2.5 1 23 617 639 617 639 0.98
13 16 3.6e-07 5.5e-05 25.1 1.4 1 23 644 666 644 666 0.97
14 16 9.8e-06 0.0015 20.6 0.8 1 19 672 690 672 694 0.95
15 16 5.5e-07 8.4e-05 24.5 1.4 1 23 700 722 700 722 0.98
16 16 9.5e-06 0.0015 20.6 5.5 1 23 728 750 728 751 0.96

Sequence Information

Coding Sequence
atggatgTGCTGGAGAATAACAACAACAAGGAATCAACCATCAGGCTACAAGATTTTCCGCTTATTTGTCGCATTTGTTGTTTAGTGCAAAATGATATGGTATTGTTCGAAGATTATTTGTTGGATCTGTTTGAGGCCGTCTGCGATATCGATgTCCGTTCAAGAGTCGAATATCCAAGAACTATATGCAATGGATGCATTAATGAGTTGGAAGATATATCGTTGTTCATTGATATTGCAAAGTTTAATGACCCATGTGTCGAAACAAACATTAAATTAGAAAAAGCCACTGAATGCGCAGATTTCATTGACAATGGAAATGAAGAGGATATGTCTCTCCAAGGATCCCAGTTTTGTCGAATTTGTTCAGCTCCAGCAAGTAGTCTAACATCTTTTGAAAAGAAATTGCATCTGATGCAGCTATTCCAAAAAATCACCAATGTTGATGGTATAGCTGAACATAACTCAAAAAGAAAATGCATATGCAACAAATGCATTAACCAACTAGAAAAGATATCATCGTTAATCAGTTCATCAttatgtaacaataaaaaactgGAAAATGCCTTCGGTAGAAATGAGGCTATGAAAACTGAATATTGTCCAAGTAAGATTGATTTAGAAATATCAACTtgccgaaaatttgaacttggaAATGTTGATAGAAATGAAGCAGTTACTGAGAATACATTTGGTTTTGAAATCGAGGAGAAATCCGAGATAATTGATATTAAGGAAGAAATTATTGATGATGCACTTGCAACTTCTaccaaacaaaaatacaaaaacaaaccGAAAATTAATTCCCAAACCATTCCTGGAGAAACATCATGGGAGGCTTTCTCAGACAAAGAAACGTTAGGAAATATTGTGGGCCTTACAACCCAAAGTGCAAAAACTCaccctggaaaaaaaaaatttaaatgtgatCATTGCGGAAAAAGTTTCGCACAAAAAAGTGGAATGCAACGCCATTTGCTTACTCACACTGGGGAAAAGGCATTCAAATGTGATCGCTgcgaaaaaagttttactcTGGAATCTTATTTAAAACAGCACTTGCTTACTCACACTGGAGGATATCCATTCGAATGTGACagctgtgaaaaaaaattccttcGGAAAATTCAATTGCAATGGCATTCGCGCATTCACACCAGGGAAAAGCCTTTCAAATGTGAAACGTGCGAGAAACATTTCGCTCGTAAGTCGACTTTAAGAGATCATTTATTCACCCACGCTCaagaaaaaccattcaaatgtGATATCTGCCAAAAAAGTTTCGCTCTGAAATTGGGTTTGAAACGGCATTCCTTCACTCACACTCAAGAAAAACCGTTTAAATGCGATAgctgtgaaaaaagttttggggAGAAAACTCAATTGCAAGGACATCTGCTCTCTCATGCCGGAAAAAAGCCATTCAAATGTGATTGGTGCGAAAAGAGTTTCACTCTGAAGGGGAATTTGCAATACCATATGTTCACTCACACTGgtgggaaaaaaagaaaattcaaatgtgATTGCTGCGAATCgagtttcattcaaaaatcgcATTTGAAGAAGCATCTCCTtgttcacactggtgaaaaatcatttaaatgTGACTTGTGCGAAAAAAGTTTCACGCGGAGAGTCGGTTTACAAATACATTTGTTCAGTCACAGCGGAGAAAAGCCGTTCCAATGTGATATCTGCGAAAGAAATTTCACGCAGAAAGTTCATTTGCGAAAACATTTGGTGACTCACACTGGGGAAACGCTATTCAAATGTTATCACTGCGGAAAAAGTTGCCCTAGCAAGTGTCATTTAAAACTGCATTTGCTCTCTCACAATAGAGAAAGGCCATTCAAATGTGATAGTTGcgaaaaaagtttctctctgaagTCGGTTTTGAAACACCATTTGTTAATACATGGAGAAAAAACATTCAAGTGTGACAACTGCGACAAAAGTTTCGCTACGAAGTCGGATTTGCAAAGGCATTCGGTCACTCACTCTCTAGAAAAGCCTTTCAAGTGTGATGTCTGCAACAAAAGATTCGCGCGGAAAGCTGATTTGCGAAGACATTTCCCCATTCACTCTGGAGACAAGCCGTTCAAATGTGATATCTGCAAAAAAAGTTTCATTCGgagaaataatttgaatacgCATTTGCTCATTCACACCGCAGAAAAGCCATTCAAATGTGATTTCTGCGAAAAAAGTTTCGCCCAGAaaattcatttgcaaaagcattTGCTCACTCACCACAAAAAAGTTTAA
Protein Sequence
MDVLENNNNKESTIRLQDFPLICRICCLVQNDMVLFEDYLLDLFEAVCDIDVRSRVEYPRTICNGCINELEDISLFIDIAKFNDPCVETNIKLEKATECADFIDNGNEEDMSLQGSQFCRICSAPASSLTSFEKKLHLMQLFQKITNVDGIAEHNSKRKCICNKCINQLEKISSLISSSLCNNKKLENAFGRNEAMKTEYCPSKIDLEISTCRKFELGNVDRNEAVTENTFGFEIEEKSEIIDIKEEIIDDALATSTKQKYKNKPKINSQTIPGETSWEAFSDKETLGNIVGLTTQSAKTHPGKKKFKCDHCGKSFAQKSGMQRHLLTHTGEKAFKCDRCEKSFTLESYLKQHLLTHTGGYPFECDSCEKKFLRKIQLQWHSRIHTREKPFKCETCEKHFARKSTLRDHLFTHAQEKPFKCDICQKSFALKLGLKRHSFTHTQEKPFKCDSCEKSFGEKTQLQGHLLSHAGKKPFKCDWCEKSFTLKGNLQYHMFTHTGGKKRKFKCDCCESSFIQKSHLKKHLLVHTGEKSFKCDLCEKSFTRRVGLQIHLFSHSGEKPFQCDICERNFTQKVHLRKHLVTHTGETLFKCYHCGKSCPSKCHLKLHLLSHNRERPFKCDSCEKSFSLKSVLKHHLLIHGEKTFKCDNCDKSFATKSDLQRHSVTHSLEKPFKCDVCNKRFARKADLRRHFPIHSGDKPFKCDICKKSFIRRNNLNTHLLIHTAEKPFKCDFCEKSFAQKIHLQKHLLTHHKKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-