Chae048951.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysolina haemoptera
Gene Symbol
-
Assembly
GCA_958298965.1
Location
OY282599.1:5166621-5172045[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.9e-06 0.0003 22.8 3.8 1 23 291 313 291 313 0.98
2 18 2.1e-05 0.0032 19.6 7.4 1 23 319 341 319 341 0.98
3 18 8.3e-06 0.0013 20.8 1.5 2 23 348 369 347 369 0.97
4 18 1.5e-06 0.00023 23.1 1.4 1 23 375 397 375 397 0.99
5 18 1.2e-06 0.00019 23.4 4.0 1 23 403 425 403 425 0.99
6 18 0.00029 0.044 15.9 4.6 1 23 431 453 431 453 0.94
7 18 0.00011 0.017 17.2 3.9 1 23 459 482 459 482 0.96
8 18 0.00038 0.059 15.6 5.7 1 23 488 510 488 510 0.98
9 18 9.1e-06 0.0014 20.7 3.3 1 23 516 538 516 538 0.98
10 18 7.1e-05 0.011 17.9 3.9 1 23 544 566 544 566 0.98
11 18 3e-05 0.0046 19.0 4.3 1 23 572 594 572 594 0.98
12 18 0.012 1.8 10.9 3.8 1 23 600 622 600 622 0.97
13 18 6.5e-07 0.0001 24.3 4.9 1 23 628 650 628 650 0.99
14 18 0.00011 0.016 17.3 2.2 1 23 656 678 656 678 0.98
15 18 1.1e-06 0.00017 23.6 3.6 1 23 684 706 684 706 0.99
16 18 0.0016 0.24 13.6 2.7 1 23 712 734 712 734 0.97
17 18 0.2 30 7.0 7.6 1 23 740 762 740 762 0.98
18 18 0.0082 1.3 11.4 2.7 1 23 768 790 768 790 0.98

Sequence Information

Coding Sequence
ATGGATGTGCTGGAGAATGAGGACTACAAGCATTCAATTATAACTTTACAAGATTTCCCATTTATTTGCCGAATCTGTTGTTTGAAACAAAGCGATTTGAGATTGTTCGAAGAACAAGGTTATTTGTTGGATTTATTCCACTCCATCACGAAAATAGATGTCCGTTCAACAGAGGAATTTCCGAAAAATATTTGCAATGTATGCATCAGTGAACTAGAAgatatatcatttttcattgatatttcaaaGAACAATGATGCTAGTTTTGGAAAGAACTTGCAACCGAAAAAAGAAATTACAGAATGCACAAATGAAATTGAAAGCGGAATGTTACGAAATATAAAGATAAATGAAGAAAATGGGGAGGATATGTTCGCCCAGGGTTCTCAAATTTGTCTAATTTGTTCGTCCTCAGCAAGTAGCCCAATGCCGTTTAAAGAGAAAGCACAACTGATAcatctttttgaaaatatcactaACATTGATgTGAAATCTGAATTTGACATCTTGAATATGTATAGCATATGCAAGAAATGTGCCTACGAATTAGAAAAGATTTCATCATTTGTCACTTCATCACTTTGTAATAATCAGAAGCTCGAACATGTCATTGGTAGACATAAGACtgtgaaaactgaaaattattcagatacAATTGACATAGAATTATCAACGTGTCAAGAATTGAAACTTGTCATTGATaggaatgaaacaatgactgAAAAGACTGTTTTGAAGACTGAAGAAATTTTTTATGGAAGTAAAGTGAAACCTGAAATTATTGATATCAAGAAAGAAATTATTGACAACGAAATTGTAACTTCTAATGACAATGTGGTGAACCATATACCTCTATGTGCGGAAAATCCATTTATGTGTGACCATTGCCAGAAAAGTTTCTCAAAGAAGTGGAATTTGCAACAGCATTTACTCACTCATAGTGAAAACAAGCCCTTCAAATGTGAAATCTGCGAAAAATGTTTCAGTCGGAAAGGTTATTTGCAGAGGCATTTCCACACCCATAGTGGAGAAAAACCAATCAAATGCGAAATCTGCCAAAAACGTTTCATGCGGAAATTTGAATTGCAACAACATATGCTATCTCATAATGGAATAAATCCATTTAAATGTGATTACTGCGAAAAAAGTTTCAAGCAGAAACCAAGTTTGCAACTGCATGTGCTAACTCACACTGGAGAAAAGCCATTCAAATGTGATAAATGCGAGAAAAGTTTCAAACAGAAACCACATTTGACAGGGCATATGCGCAGTCACAGTGGAGAAAAGCCATTTAAATGTGAACGATGCCAAAAATGTTTCAGTTGGAAAAGCAATTTACAAAAACATATGCCCACTCACAGTGAAAAAACTCCATTCAAATGTGATTGCTGTGAAAAACGTTTCAAgcaaaaaccaaatttgaatcgGCATATGCTCATCACTCATAGTGAAGAAAAACCATTCAAGTGCGATTGctgcgaaaaaaaattcaaggagAAATCGCAGTTGAAAACGCATATGCTCACTCACGGCggagaaaaaccattcaaatgtGACATTTGCGAAAAACATTTCATTCAGAAACTACATCTGAAAGCGCATATGCTCATTCACAGCGGGGAAAAGCAATTCAAATGTAATAGCTGCGAAAAATGTTTCAGTGTAAAGATTTATTTGCAAGCGCATATGTTCACACACAGTGCAGAAAGACCATTCAAATGTGATATCTGCAAAAAAGGATTCATTCAGAAATGTAAACTGAAACAGCATATGCTTTCTCATACTGGAGATAAACCGTTTAAATGTGATATCTGCGAAAAACGTTTCTTTAGGAAATGTATATTGCAACAACATGTACTCTCTCATAGGGGTGACAAACCATTTAAATGTGAttactgcaaaaaaaaattcacgcaGAAACTATATTTGAAAAGGCATATGCGCGTTCACAGtggagaaaaaccattcaaatgtGATTTCTGCGTAAAAAGTTTCAGTCAAAAACTACATGTGACAGCGCATATGCTCATTCACAGTGGGAAAAGGCTATTCAAATGTGAAAGTTGCGAAAAATGTTTCACTAGGAAGGGTTATTTGCAAGCGCATATGCTCACACACAGTGCAGAAAAACCATTCAATTGTGATATCTGCAAAAGAGGTTTCATTCAGAAATGTAAATGGAAAGAACATATGCTCTCTCACACTGGAAAGCAACCGTTCAAATGCAATGTCTGCAAAAAACGTTTCTTTAAGAAATGTATATTGCATCAACATATGCTCATTCATAATAGAGTAAAATCATTCAAATGCGATTGCTGTGATAAGGATTTCTATGAGATATTCAATTTGGAACAACACATGCTCACTCACTCTGCAACTATTGATATCAAGGAAGAAATTATCGATATCAAGGAAGAAATTATCGATACCAAGGAAGAAATTATCGATAGCGAACTTGAACCTTCTACTGTCAGTGATAGAAATCCTTTTCGAGTTTCAGGCAGAAACCACATTTGA
Protein Sequence
MDVLENEDYKHSIITLQDFPFICRICCLKQSDLRLFEEQGYLLDLFHSITKIDVRSTEEFPKNICNVCISELEDISFFIDISKNNDASFGKNLQPKKEITECTNEIESGMLRNIKINEENGEDMFAQGSQICLICSSSASSPMPFKEKAQLIHLFENITNIDVKSEFDILNMYSICKKCAYELEKISSFVTSSLCNNQKLEHVIGRHKTVKTENYSDTIDIELSTCQELKLVIDRNETMTEKTVLKTEEIFYGSKVKPEIIDIKKEIIDNEIVTSNDNVVNHIPLCAENPFMCDHCQKSFSKKWNLQQHLLTHSENKPFKCEICEKCFSRKGYLQRHFHTHSGEKPIKCEICQKRFMRKFELQQHMLSHNGINPFKCDYCEKSFKQKPSLQLHVLTHTGEKPFKCDKCEKSFKQKPHLTGHMRSHSGEKPFKCERCQKCFSWKSNLQKHMPTHSEKTPFKCDCCEKRFKQKPNLNRHMLITHSEEKPFKCDCCEKKFKEKSQLKTHMLTHGGEKPFKCDICEKHFIQKLHLKAHMLIHSGEKQFKCNSCEKCFSVKIYLQAHMFTHSAERPFKCDICKKGFIQKCKLKQHMLSHTGDKPFKCDICEKRFFRKCILQQHVLSHRGDKPFKCDYCKKKFTQKLYLKRHMRVHSGEKPFKCDFCVKSFSQKLHVTAHMLIHSGKRLFKCESCEKCFTRKGYLQAHMLTHSAEKPFNCDICKRGFIQKCKWKEHMLSHTGKQPFKCNVCKKRFFKKCILHQHMLIHNRVKSFKCDCCDKDFYEIFNLEQHMLTHSATIDIKEEIIDIKEEIIDTKEEIIDSELEPSTVSDRNPFRVSGRNHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-