Basic Information

Insect: Chrysolina haemoptera
Gene Symbol: jockey\pol
Assembly: GCA_958298965.1
Location: OY282595.1:20441324-20457822[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00029 0.045 15.9 3.2 1 23 995 1017 995 1017 0.97

2 18 6.8e-05 0.01 17.9 1.8 1 20 1023 1042 1023 1045 0.94

3 18 0.00032 0.048 15.8 1.0 1 23 1051 1073 1051 1073 0.98

4 18 0.00037 0.056 15.6 4.0 1 21 1079 1099 1079 1101 0.94

5 18 0.0001 0.016 17.3 4.7 1 23 1107 1129 1107 1129 0.99

6 18 3.7e-05 0.0057 18.7 5.8 1 23 1135 1157 1135 1157 0.97

7 18 1.1e-05 0.0018 20.4 6.1 1 23 1163 1185 1163 1185 0.96

8 18 2.5e-07 3.8e-05 25.6 2.7 1 23 1191 1213 1191 1213 0.98

9 18 0.00018 0.028 16.6 6.7 1 23 1219 1241 1219 1241 0.97

10 18 0.0003 0.045 15.9 4.6 1 23 1247 1269 1247 1269 0.98

11 18 1.1e-06 0.00017 23.6 4.8 1 23 1275 1297 1275 1297 0.98

12 18 3.5e-06 0.00053 22.0 6.5 1 23 1303 1325 1303 1325 0.98

13 18 7.1e-05 0.011 17.9 9.1 1 23 1331 1353 1331 1353 0.98

14 18 4.3e-05 0.0066 18.6 7.7 1 23 1359 1381 1359 1381 0.98

15 18 4.7e-05 0.0072 18.4 7.1 1 23 1387 1409 1387 1409 0.97

16 18 0.00016 0.024 16.8 0.4 1 23 1415 1437 1415 1437 0.97

17 18 0.22 34 6.9 5.0 1 23 1447 1469 1447 1469 0.98

18 18 4.1e-07 6.3e-05 24.9 1.8 1 23 1475 1497 1475 1497 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00029	0.045	15.9	3.2	1	23	995	1017	995	1017	0.97
2	18	6.8e-05	0.01	17.9	1.8	1	20	1023	1042	1023	1045	0.94
3	18	0.00032	0.048	15.8	1.0	1	23	1051	1073	1051	1073	0.98
4	18	0.00037	0.056	15.6	4.0	1	21	1079	1099	1079	1101	0.94
5	18	0.0001	0.016	17.3	4.7	1	23	1107	1129	1107	1129	0.99
6	18	3.7e-05	0.0057	18.7	5.8	1	23	1135	1157	1135	1157	0.97
7	18	1.1e-05	0.0018	20.4	6.1	1	23	1163	1185	1163	1185	0.96
8	18	2.5e-07	3.8e-05	25.6	2.7	1	23	1191	1213	1191	1213	0.98
9	18	0.00018	0.028	16.6	6.7	1	23	1219	1241	1219	1241	0.97
10	18	0.0003	0.045	15.9	4.6	1	23	1247	1269	1247	1269	0.98
11	18	1.1e-06	0.00017	23.6	4.8	1	23	1275	1297	1275	1297	0.98
12	18	3.5e-06	0.00053	22.0	6.5	1	23	1303	1325	1303	1325	0.98
13	18	7.1e-05	0.011	17.9	9.1	1	23	1331	1353	1331	1353	0.98
14	18	4.3e-05	0.0066	18.6	7.7	1	23	1359	1381	1359	1381	0.98
15	18	4.7e-05	0.0072	18.4	7.1	1	23	1387	1409	1387	1409	0.97
16	18	0.00016	0.024	16.8	0.4	1	23	1415	1437	1415	1437	0.97
17	18	0.22	34	6.9	5.0	1	23	1447	1469	1447	1469	0.98
18	18	4.1e-07	6.3e-05	24.9	1.8	1	23	1475	1497	1475	1497	0.97

Sequence Information

Coding Sequence: ATGCTCTCTGATATGGTTTCTATATTTTACGACATTCTTTACTTCATCATCGACCGCTTTGtcccgcaaaaaaaaatatatgaaaagaaATTCCCATGCTGGCATTCCCCCGAGCTGAAGAAATTAATTCACGAGAAGAAATCAGCGCACAAGATTTACAAGAGCTCCAGGTGTCCCGAAAGCTATGCAGCATTTAGTTCTCTAAGATCAAGATGTAAATCGCTATCAAGACAATGCTACACGGATTACATTCAACGTACTGAACACTCTATTATTAATAATGTTAAATCCTTTTGGAAATTTGTAAGCAGCAAAAGGTTAAGTAACACTATACCAGATACAATGACTTATGGTGATTTAACTGCTCGCACTGGGATTGATATTGCCAACCTTTTCGCCAACCAATTTTCTTCAGTCTATTCAAATCAACCCTTACATCCTAACGATACTCCTATTACATCTGTGGTTAACGTGTCTAATTATCacatcgaaatttcgaaaatctATGAAAAACTGTCTGAACTTAACACCAACAAAGGCCCTGGCCCCGACGGAATTCCTCCTACTTTTCTTAAATCATTTAGTTTCATTTTATCTCGCCCactcttttatatatttaataggTCTCTATCATCAGGCGAATTTCCGGATTACTGGAAAACCTCATATGTTACTCCAATTTATAAATCTGGCCGAAAATCTGACGTGAGCAATTATCGTCCTATTTCTATACTTAGCGCTATCCCCAAAGCTTTTGAGAGTATCATATTTGACTTCCTTTCCTACGATTGCTCAGTAATAATAGGGACtcagcaatttggatttgcATCCAAAAAATCAGCTGAACTAGGTCTTATCACGTATGTGAATTTTCTGTCGGAAGCTCTGGAAAGGGGATCACAAATTGACTCTGTGTACACTGATTTTTCCAAAGCTTTCGACAAAGTCAATCATGAGCTCCTGATTCATAAACTTCGATTATACGGCATTAACGGCACAGTATTACCATGGCTCAGGAGCTACCTTATGGAAAGAACACAAATTGTCAAGGTTAATCACTACTACTCGCATCCCATCGCAGTTACCTCGGGTGTCCCACAAGGATCGCATTTGGGACCATTGCTGTTTAACCTTTTTATTAACGACCTCATTAGCTGTTTTCAAGAAAGTGAAGCTTTGCTGTTTGCTGACGACctgaaatgttttaaaataatcagaaaCGAGGCTGATTCAATAagccttcaaaatgatattgattgcCTATCTAACTGGTGCACCCTAAACGGAATGTGTCTGAATGCTTCCAAATGCCATATTCTTCGTTTCCACCGAACTCACCACCCAATCACCTTTGATTACAGCATTAATAATTCTACCCTCCATTCAGCTATCGAAACCAAAGATCTAGGTGTGATCCTAGACTCCACACTTAGCTACAGATCCCACATTTCCACTGTCACTCAGAAATCTATGAAGATGCTAGGCTTTATAAAGAGAACCACCTGCGACTTTACTAACATCACGGCTATTAAATCCCTTTACTTTTCTCTCGTTAGATCTCACCTCGACTATTGCTCATCAGTTTGGTCTCCCCATTATGCGACATACAAAACGAAGCTTGAGGCTGTTCAGCACAAGTTTCTTAGATATATAGCCTACAAGATGCATGTAAACTATGACTATGCTGCATTGGAACGCATATTGAATCTTCCTTCTCTTGAGGTACGCAGGAAGCAAAGAGACCTATTACTTCTATTTAAGATTGTCAATGGACTTAGCAACAGTCCAGAGCTCCTCTCTAAAATATCCCTATTTGTCCCCAGTCGGGCAACTAGACAGGGTAATTTGCAGAGGCCTCCTTCAACAACATCCGTTCCAACTGATCTTAGGGTTAATACCACTGCATTGAATGCTGTAGCTCTCAGTAACGTTGCAAAATACTGGGTGTTGACGAATTTGTTGCCTGGGCCTATTCCACAAGTATCCGTCTATGGTTTACCAGGTACCAACAGAGAAAATCAAGGGAAAATAGCGCAGGATGCCATGCTGAGTCAGCATGCTAATCTCCTCCAAGCAGATCCATTGCTTATTCAACAACATTCACAAATTCCAGTAAGCATAGCTAGCTCTCAAGGGAACTTGGGCATACCGGCTGGAATACATCTTGAAACCGTCCATGGTATGACTAATCATCATCAAAATGGGAATGTGGCATCACAGAACCAGAATCAGATATCCAGAGATGTGAGGATATCACAATCTCACCAACAAAATCTTCAACATGCTGGACATGGAGAACAGCAAAATATGGTTCAAGTCCAGGTTCAAGATAATATGGTATCTGTTATTGAAGATAATAAAGACCAGAAAGATCTCATTTCAGCTCAGCTGCAAGCAATACAAGCTGCTCAACTACAGCTCACTGAAAATCAACTAAACCAACAAGCCTTAACTGTGCAACAGCTACAACATTTGCAAGTACAACAGGTTTTGGACAGCGTGGTGAGATTGGAGAACTCTGAAACTAACCAGCaccaatctaatagtgaaacaGATTCATTGACTGAGACAATACAAATAGTAAAAGATGAGAAAACATTTCAGAACTGTAAGTTACTTTCCGGAGCTCAGTTTGGACTTCAGGACATTAAAGCAAATATGATGGACGTGAGGACAGCTGATGGTAGTATAGTAAAAATACAGACAAATATGCAGGAACAAGAATTAGTGAAGGCTTTGGGAGTTGATATTGTAAACAATATGTATAAGGTTAATGTGGATGACTTGAATCAGTTATTAGCTTATCATGAAATTTTTGGGAAGCTACAAAATGGTCAGGGTGGTGAAATATCGAATGTCAGTCAAAATGTAGGCCAAACCAACCTAAATATCTCCAATTCAAATATAACAATAGTTACCAAAGATGAACAAGAACCATCCACAAGCAACATCAACAACGAAAATATACCAGTAGTTGGTACACATACTTGTGATCTTTGTGGTAAAATGTTTCAGTTTCGTTACCAACTAATTGTACATAGACGTTATCATACTGAACGCAAACCTTTTACTTGCCAGGTATGCGGAAAGGCTTTTACTAATGCCCAAGAACTCACTCGACATGGCAAATGTCATTTAGGGGGCAGCATGTTCACATGCGCTGTGTGCTTTCATGTGTTCGCAAATGATGCTTCATTAGAACGCCATATGAAGAGACATTCTACTGATAAACCATATGCATGCACTCTTTGCGGAAAGACTTTTGCAAGAAAAGAACATCTAGACAATCATACGAGGTGTCATACAGGTGAAACTCCTTACAGATGTCAGTTTTGTGCTAAAACTTTCACACGAAAAGAACATATGGTGAACCATATAAGGAAACACACAGGTGAAACTCCACACAAATGCGAAATTTGTAAGAAATCTTTCACGAGAAAGGAGCACTTCACAAATCATGTAATGTGGCATACTGGACAAACTCCTCATCACTGTAATATTTGTGGAAAAAAGTACACTAGGAAAGAACACTTGGCCAATCATATGAGAGGCCATACTAATGATACTCCGTTCAGgtgtGAAATTTGTGGAAAATCATTCACACGAAAGGAACATTTTACGAATCACATCATGTGGCACACGGGTGAAACTCCTCATCGTTgtgatttttgttccaaaacATTCACTCGAAAAGAACATTTATTGAATCATGTGAGGCAACACACAGGTGAATCACCACATCGTTGTGGATATTGTGCCAAATCTTTTACAAGAAGAGAACATATGGTCAACCATATAAGGCAGCATACAGGAGAGACACCATTCAGATGCACACATTGTCCAAAAGCTTTTACAAGAAAAGATCATCTTGTGAATCACATCCGACAACACACTGGGGAATCTCCACACAAGTGTACTTATTGTCCAAAATCTTTCACCAGAAAAGAACATCTGAATAATCATGTGCGACAACATACAGGAGAGTCTCCACACAGatgtcatttttgttcaaagtctTTCACTAGAAAAGAACACTTGACCAATCATGTCAGAATTCATACAGgcgAGTCACCTCATCGCTGTGAATTCTGTCAGAAAACCTTCACCCGTAAGGAACATCTAACCAACCATCTGCGACAGCATACCGGAGAGACGCCACATTGTTGTAACGTTTGCTCCAAACCATTCACAAGAAAAGAACATCTTGTGAATCATATGAGATCCCATACTGGTGAACGACCATTTGCATGCAACGAATGCGGAAAGTCCTTTCCGCTCAAGGGCAATCTATTATTCCACCAGCGCTCTCATAACAAAGGTGCTgcagcagaaagaccttttagatgTGACCTATGTGAGAAAGATTTTATGTGTAAAGGTCACTTAGTGTCCCATAGACGGTCTCACATGGGAGAGAGGCCTCATTCTTGTCCTAACTGTGGtaaaacgtttgtagaaaaaggaAATTTGTTGaggcatatgaaaaaacacGCTACTGAAACTGCACAAGTTAATCAGCAAATTAATCAAGTACAAGTTAATGCTCAACAGCAACAAAGTGACTCGGCTAATAATGCAAATATTCAGATGACCCAAGTGCAAGTTAATTCCTCACAACAGCAGCAACAACAGCAGCAACAGCAACAGCAAACTTCTAATAGGAATATTGGACAGTCCGCACATGTGCAAATGCACCCATCTATAAATAGTTCTGTTTTACAAACTGCCAATGCTAACGTTTTAGCATCATCATATTGA
Protein Sequence: MLSDMVSIFYDILYFIIDRFVPQKKIYEKKFPCWHSPELKKLIHEKKSAHKIYKSSRCPESYAAFSSLRSRCKSLSRQCYTDYIQRTEHSIINNVKSFWKFVSSKRLSNTIPDTMTYGDLTARTGIDIANLFANQFSSVYSNQPLHPNDTPITSVVNVSNYHIEISKIYEKLSELNTNKGPGPDGIPPTFLKSFSFILSRPLFYIFNRSLSSGEFPDYWKTSYVTPIYKSGRKSDVSNYRPISILSAIPKAFESIIFDFLSYDCSVIIGTQQFGFASKKSAELGLITYVNFLSEALERGSQIDSVYTDFSKAFDKVNHELLIHKLRLYGINGTVLPWLRSYLMERTQIVKVNHYYSHPIAVTSGVPQGSHLGPLLFNLFINDLISCFQESEALLFADDLKCFKIIRNEADSISLQNDIDCLSNWCTLNGMCLNASKCHILRFHRTHHPITFDYSINNSTLHSAIETKDLGVILDSTLSYRSHISTVTQKSMKMLGFIKRTTCDFTNITAIKSLYFSLVRSHLDYCSSVWSPHYATYKTKLEAVQHKFLRYIAYKMHVNYDYAALERILNLPSLEVRRKQRDLLLLFKIVNGLSNSPELLSKISLFVPSRATRQGNLQRPPSTTSVPTDLRVNTTALNAVALSNVAKYWVLTNLLPGPIPQVSVYGLPGTNRENQGKIAQDAMLSQHANLLQADPLLIQQHSQIPVSIASSQGNLGIPAGIHLETVHGMTNHHQNGNVASQNQNQISRDVRISQSHQQNLQHAGHGEQQNMVQVQVQDNMVSVIEDNKDQKDLISAQLQAIQAAQLQLTENQLNQQALTVQQLQHLQVQQVLDSVVRLENSETNQHQSNSETDSLTETIQIVKDEKTFQNCKLLSGAQFGLQDIKANMMDVRTADGSIVKIQTNMQEQELVKALGVDIVNNMYKVNVDDLNQLLAYHEIFGKLQNGQGGEISNVSQNVGQTNLNISNSNITIVTKDEQEPSTSNINNENIPVVGTHTCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNAQELTRHGKCHLGGSMFTCAVCFHVFANDASLERHMKRHSTDKPYACTLCGKTFARKEHLDNHTRCHTGETPYRCQFCAKTFTRKEHMVNHIRKHTGETPHKCEICKKSFTRKEHFTNHVMWHTGQTPHHCNICGKKYTRKEHLANHMRGHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGYCAKSFTRREHMVNHIRQHTGETPFRCTHCPKAFTRKDHLVNHIRQHTGESPHKCTYCPKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLVNHMRSHTGERPFACNECGKSFPLKGNLLFHQRSHNKGAAAERPFRCDLCEKDFMCKGHLVSHRRSHMGERPHSCPNCGKTFVEKGNLLRHMKKHATETAQVNQQINQVQVNAQQQQSDSANNANIQMTQVQVNSSQQQQQQQQQQQQTSNRNIGQSAHVQMHPSINSSVLQTANANVLASSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -