Chae010344.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282585.1:54713544-54719023[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1e-05 0.0016 20.5 0.3 1 23 129 151 129 151 0.98 2 22 3.8e-06 0.00058 21.9 2.7 1 23 157 179 157 179 0.98 3 22 8.9e-07 0.00014 23.9 2.2 1 23 185 208 185 208 0.94 4 22 0.29 45 6.5 3.7 1 23 219 242 219 243 0.93 5 22 6.1e-05 0.0094 18.1 3.4 1 23 247 269 247 269 0.98 6 22 0.00062 0.095 14.9 2.3 1 23 285 307 285 307 0.94 7 22 2.3e-05 0.0035 19.4 0.4 1 23 311 333 311 333 0.99 8 22 0.0084 1.3 11.3 6.4 2 23 340 361 339 361 0.96 9 22 0.024 3.6 9.9 0.2 3 23 369 389 368 389 0.98 10 22 1.7e-06 0.00026 23.0 2.2 1 23 394 416 394 416 0.97 11 22 3.9e-06 0.0006 21.8 1.3 1 23 421 443 421 443 0.99 12 22 4.3e-05 0.0066 18.6 0.2 2 23 478 499 477 499 0.97 13 22 0.0053 0.81 12.0 1.3 1 23 505 525 505 525 0.97 14 22 0.002 0.3 13.3 4.9 1 23 531 553 531 553 0.98 15 22 0.085 13 8.2 3.3 1 23 559 581 559 581 0.97 16 22 0.012 1.8 10.9 2.9 1 23 587 609 587 609 0.97 17 22 0.00026 0.04 16.1 0.2 1 22 615 636 615 636 0.96 18 22 0.4 62 6.1 3.0 1 23 643 665 643 665 0.98 19 22 5.9e-07 9.1e-05 24.4 1.4 1 23 674 696 674 696 0.96 20 22 2.5e-07 3.9e-05 25.6 0.6 1 23 702 724 702 724 0.97 21 22 0.00048 0.073 15.3 0.2 1 23 730 752 730 752 0.98 22 22 8.9e-05 0.014 17.6 5.4 1 23 758 781 758 781 0.97
Sequence Information
- Coding Sequence
- ATGGATTCTGTGGGGGATTCAAGTCCCCTTATGTTAAGTCATATCAAGTATGAACCTCCTGAGGACCATGTTGAAACAATTATCATTGAGGTTACGAAAGACGAGGAGATTGTAGACGATATCACTAGGTCGTCACTCAATCCAGAAGACAAGGAACAGATAGAATTTGAGGAAGATGGTACCTTACCAGAATTTCAAGAGGGAGAAGCCTTCATTAAAGAAGAACCAAAAAATGAGCAGTTCGTAGACGAATTTGTGTCGgtgaaaaatgaaatagaatggggtactgaaaatgaaaacaattcgGAAGTAGAAGAAGATGTAGACTTGTTGGATGTCGACGATCCACCAAAGGATGTATCTAAACTCTCCTCTAAAGACCGTTATCCATGTCTCATTTGCAGTAAAAGCTTTGCTCGTACACAAGTTTTGGAGAGGCATATGCGTATTCATACTGGTGAACGGCCCTTCCAGTGCCACATCTGTCCTAATAGCTTTTCTCGGCAAACCACTTTGACCAGACACCTCGTGACCCACACAGGTGAGCGATATTTCAAGTGCAAGGACTGCCCAAGAAGCTTTTCTCGAAGAGCTCATTTGAATAGACATGCTGATAGAATTCACGGTACTACTACAGCCCAAGTGGAAGAGAAGTTCCAATGTTTCATGTGTGAGAAGACCTTTCTGAGAAAACTTTCCTACATAAAGCACGTGTTCAGTGTCCACCACCCAGGTCAGTTCCAGTGCAGTCATTGCCCAAAGAAATTCACACTGGAGCAAAGCCTCCAGAAACACCTGCAACTCCATGGTGAGGCACCAATACGGCAAAAAATCAAAGACGAAGAAGCACCCTTCTTGTGCGATCTTTGCGGAAGAACCTTCTCCTTGAAAACATTCTTAGAAAGACACAGGAAATTTCACGAAGAAAACTACCAATGCGAAGTTTGTGGAAAGCGTTTTGGAGTGGAACTGAGCCTCAGAAGACATTTACAAAAACACTTGAGACAGCAGCACCTTCAATGCAAGCTTTGCTCCAAACGCTTCCATAAGAAGAGTGCTTACAACAATCACATGGAACACCATCAGAACCCTGAATATTCACTCTGCGACATTTGTGGTAAATGGATTCCTTCAAAAGATAGTTTTGTCAGACACCGCCGATCTCACTTTAGATACCGACATCGATGCCTTGTGTGCGGGAAGAAGTACTCCAGGAAAGATCTCTTGGAGAGGCATATGAAAGGACACAAACCGCGCCCTTTCAAATGTTCCGAATGCCCGTTGTCCTTCAGCCAGGAAAAGAACCTCATCAGCCATAAGAAGACTCACGAGAAAAAATGCTCATCAGGGTTGAACGCGTTGCTTTTTGCAGAACCGTCCGTTGAACTCTTGAAAGTTGAAACTGTAGAAACGGAATCGATTCCGGAGATTCGTTGCACCGTTTGCGCAAAGGTGTTTTCGGCAAAGGCCTACTTGATCAGCCACATGCGCTCCCACTCCGATGAAGCCAAGTTCGAGTGCCCGATATGCTTCAAAAAACTGAAGACGAATCTGGAACGACACATGAAAATCCACTCTGACGACAGGCCTTTCGAATGCCACATCTGCCACAGACGTTTCCGCCTGAAGGAAGTAATGACGGTGCATCTAAAGACGCACTCGGTAGAACCGGCTTTCACCTGCTCCGTGTGCTCGAGAGGGTTTTTCTCGAACCGCTCGCTAGTCTGTCACATGAGCAGCCACACCGAAGAATATCCGTTTAGATGCAAATTCTGCGACAAAACCTTCCACGCGATGTCGCTGTTTCTCGCCCACGAGAAGGTGCATACCGGGGAGAGGCCTTTCCAGTGCGCCGTGTGCGGGAAGGGCTTCATCGAGAAGGGCAAGCTGAAGGATCACACGAGGAAAAACCCCGAGAAGAAGGTGTTCTCGTGCACCAAATGTCCCAGTCGGTTTTGTTTTGAGAGAATTCTCTTGGCGCATTTGAAAACCCACGGGGACGTCGAGGTTAGGCGACCGCACGCGTGCGATGTCTGCAACAAGACGTTTCCGAAGAAGTCCACGTTGACGGTGCACATGAGAGTGCACACGGGCGATCGCCCTTACGCATGCAATATCTGCGAcaagactttccaaaggcagtaCTTGTTGACGGTGCACATGAGAGGGCATACGGGAGATCGCCCTTATCAGTGTTTGGTGTGCTCGGCGCGTTTCACTACGAATGCTACGTTGATGGAACATGAGAAAGTCCATACCAACGAGCGCGCGTTTTCGTGCCACCTTTGCACCAAGAGTTTTCGAAGGAATACTCATTTAGTCGGTCATATAAAAAGACTTCATAGAGACGGCAAGCTGTTCAGGAAAAGTAAAGGTGCCATTGCTGATCAGGGAGAGGGAAAACTCCTGAAGCAGGCTGAGGAGACGAAGAAAAGAGTTGTCATCAAGGTGATACGGAAAAAGAATCCCCAGAATCTCAGTAATGCCGATATTTCCTGA
- Protein Sequence
- MDSVGDSSPLMLSHIKYEPPEDHVETIIIEVTKDEEIVDDITRSSLNPEDKEQIEFEEDGTLPEFQEGEAFIKEEPKNEQFVDEFVSVKNEIEWGTENENNSEVEEDVDLLDVDDPPKDVSKLSSKDRYPCLICSKSFARTQVLERHMRIHTGERPFQCHICPNSFSRQTTLTRHLVTHTGERYFKCKDCPRSFSRRAHLNRHADRIHGTTTAQVEEKFQCFMCEKTFLRKLSYIKHVFSVHHPGQFQCSHCPKKFTLEQSLQKHLQLHGEAPIRQKIKDEEAPFLCDLCGRTFSLKTFLERHRKFHEENYQCEVCGKRFGVELSLRRHLQKHLRQQHLQCKLCSKRFHKKSAYNNHMEHHQNPEYSLCDICGKWIPSKDSFVRHRRSHFRYRHRCLVCGKKYSRKDLLERHMKGHKPRPFKCSECPLSFSQEKNLISHKKTHEKKCSSGLNALLFAEPSVELLKVETVETESIPEIRCTVCAKVFSAKAYLISHMRSHSDEAKFECPICFKKLKTNLERHMKIHSDDRPFECHICHRRFRLKEVMTVHLKTHSVEPAFTCSVCSRGFFSNRSLVCHMSSHTEEYPFRCKFCDKTFHAMSLFLAHEKVHTGERPFQCAVCGKGFIEKGKLKDHTRKNPEKKVFSCTKCPSRFCFERILLAHLKTHGDVEVRRPHACDVCNKTFPKKSTLTVHMRVHTGDRPYACNICDKTFQRQYLLTVHMRGHTGDRPYQCLVCSARFTTNATLMEHEKVHTNERAFSCHLCTKSFRRNTHLVGHIKRLHRDGKLFRKSKGAIADQGEGKLLKQAEETKKRVVIKVIRKKNPQNLSNADIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -