Chae017401.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- SCRT1
- Assembly
- GCA_958298965.1
- Location
- OY282587.1:37781466-37794757[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00033 0.63 11.8 0.5 14 38 314 335 309 340 0.87 2 5 0.055 1e+02 4.7 0.6 17 28 348 359 337 374 0.72 3 5 0.0083 16 7.4 0.4 18 28 375 385 365 398 0.82 4 5 0.00054 1 11.2 0.4 19 41 404 423 391 425 0.88 5 5 0.052 98 4.8 1.9 13 43 426 453 423 454 0.88
Sequence Information
- Coding Sequence
- ATGCATACCTCGCTCATTTTTAAAAGAGCTTACTACGGGCTTAAAACGATTTATGCCAATAGAGATTTGTTGACTATGAAATCAAAAACATTACTATGTTCATCCCAACACTTCGCACACCCATCAGAAAGGGCAGTCACTCGGTGCATCACTTCTGATGGCGAAATTAAAACGTTACCGAAGCGAAGTGCAGAAGAAACAGAAGCTGCCCATGACCTCCTTTCTCTCTCCCAGAGTTTACCGCCACTTCCAGCACCGAGTGTGGTCATGATACACCACACTATCCCTACCGAACAAGACCCACCGAGTCCGACACACTGCTATCGACCGCTGTCTCCCGAAAATAGCTCTGAAAAACCTACACAGAGGCCAGTCATCCAACAAACAACTATCCAACAGCCAGTACCAGTTCACCAAATTCACCAACCGTTACCGATTCGTGCCACTCCTGTTATCGTTCAAACCACCCAGCAAGTAGTAGTTCCTTGTCCAATAGTTTACGTAGTGGAAGTCCCCGGAGCAGTTCCTACGCCCCCGACGTCGGAATGTTCTTCGGACGCCGAAAATATACACATGGGCATCGTGGAGACGTTCAATCAGAATGTCACTATGATCTCGGAACAGAGCGACGATATTATCATTCTTCCCCTGTCTCCCGAGCCAGACATTCAAGAAGTGGCGCGAGATGAGCTTCATCATAACACGGTGGTTGCGTCTTCCCATCTCAACATTCCCGACCGACGGAAAAGAAGTAATAAAAGGACCAATAAAAGTAACAAGACTCCAAAAAACAACAATGACAGCTCAGCTAGCGATAACAATATTGATTCCAGTAGCTCTGAAACTACTACTTCTCCAAAAACGaagttCTTCAAAGTCGTTGATGAAGAGGATGATGAAGAAATTGACGTCGAAAGTACCGGCGACCTGGATCCTTCGAAAAATCGTTACGTATGCGGCGAATGCGGTAAGCAATACGCCACCTCCAGCAACCTATCGAGGCACAAACAAACGCATCGGAGTCTCGACTCCCAATCTGCGAAGAAGTGCATGACTTGCGGCAAGGCATACGTCAGCATGCCTGCTTTGGCCATGCATCTTCTAACCCATAAATTATCACACAGCTGCGGCATCTGCGGTAAGCAATTCTCAAGGCCGTGGTTACTCCAAGGCCACCTCAGGTCTCACACGGGCGAGAAGCCGTACGGCTGTGCGCATTGCGGTAAAGCTTTCGCGGATAGATCGAATCTGCGCGCGCACATGCAAACGCATTCGACGGATAAAAACTTCAGCTGTACAAAGTGTCAAAAAACGTTCGCGTTGAAGTCTTATCTGAATAAACATCTAGAATCCGCATGTATGGTTTTTGATTTGAAAACGCAGCGGTATAAGAAACTGACAGTTCATGCTGAAACGCAAACAACCATAGTGGTTGACTGA
- Protein Sequence
- MHTSLIFKRAYYGLKTIYANRDLLTMKSKTLLCSSQHFAHPSERAVTRCITSDGEIKTLPKRSAEETEAAHDLLSLSQSLPPLPAPSVVMIHHTIPTEQDPPSPTHCYRPLSPENSSEKPTQRPVIQQTTIQQPVPVHQIHQPLPIRATPVIVQTTQQVVVPCPIVYVVEVPGAVPTPPTSECSSDAENIHMGIVETFNQNVTMISEQSDDIIILPLSPEPDIQEVARDELHHNTVVASSHLNIPDRRKRSNKRTNKSNKTPKNNNDSSASDNNIDSSSSETTTSPKTKFFKVVDEEDDEEIDVESTGDLDPSKNRYVCGECGKQYATSSNLSRHKQTHRSLDSQSAKKCMTCGKAYVSMPALAMHLLTHKLSHSCGICGKQFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSTDKNFSCTKCQKTFALKSYLNKHLESACMVFDLKTQRYKKLTVHAETQTTIVVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00330013;
- 90% Identity
- iTF_00330013;
- 80% Identity
- iTF_00330013;