Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.34 6.5e+02 2.2 0.1 19 28 9 18 7 26 0.87

2 8 0.0077 14 7.5 0.8 10 31 53 74 48 78 0.83

3 8 5.6e-06 0.01 17.5 0.3 4 33 76 105 74 111 0.77

4 8 0.0008 1.5 10.6 0.2 18 44 120 143 112 143 0.88

5 8 0.00095 1.8 10.4 0.4 16 40 150 171 147 174 0.88

6 8 0.0016 3 9.7 1.3 5 39 168 198 164 205 0.79

7 8 0.033 62 5.5 0.5 18 26 208 216 201 221 0.83

8 8 0.1 1.9e+02 3.9 1.1 4 26 222 244 219 256 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.34	6.5e+02	2.2	0.1	19	28	9	18	7	26	0.87
2	8	0.0077	14	7.5	0.8	10	31	53	74	48	78	0.83
3	8	5.6e-06	0.01	17.5	0.3	4	33	76	105	74	111	0.77
4	8	0.0008	1.5	10.6	0.2	18	44	120	143	112	143	0.88
5	8	0.00095	1.8	10.4	0.4	16	40	150	171	147	174	0.88
6	8	0.0016	3	9.7	1.3	5	39	168	198	164	205	0.79
7	8	0.033	62	5.5	0.5	18	26	208	216	201	221	0.83
8	8	0.1	1.9e+02	3.9	1.1	4	26	222	244	219	256	0.80

Coding Sequence: ATGGAGCTATCAATGCCACTACATTGCAAAATTTGCGACGAAAACTACAAGACAAATCAAGATTTCGCGTTCCATTCCAAAATACACGACGCAGACTTGCTGTATTCCTGCCATCTCTGCGAATTCAAATGcgatgccaaaaaagaaatCAGAGCCCACATGATGAACCACAACGTTTACAAATGCGAGTTGTGCGACAAAATCTTCAAATTCAAACATGGCGCTTACAGGCACGCCGAAATCCACCTGGATCAAAACAGTGTACAGTGCGAAATATGTGGGAAAAACCTCCAAAGGCAATCTTTGAACACCCACATGAAACTTCTTCACTCCGACGAATTTTCCGGTGTATCGTACGATTGCTCCATTTGCAAGAAGGCTTACAAATATAACTCCAGCctcaaaaaacatatttcattcaatcatagAGAGCTCGGAATCGATGTTTCTGTCGTTTGTGACATATGCGGAAGAAGGATTTCCAGTAAAAGTAAGTTGCAGCAGCATCTTAAAATACACAGTGGTGAAAAACCATATTCGTGTACCTATTGTGAGAAGCAGTTCCGATCCAAGGACACTATGAAATCGCACATGGTTGTGCATACTGGAGAAAAGCCCTACATATGCGGGTACTGTGGAAAAAAATTCGGCCAGAGTGCCCCCTATCGATATCACATCAAAACTCACACCGGCGAGAAATCGTATAGTTGTTCTATTTGTGGAAAAGGGTTTATCTCGAAAGCCAATTGGAAACTGCATGTGAAAACTTGTGATATATTGTCTAATGAGAGGATTAAACGAGAATGA
Protein Sequence: MELSMPLHCKICDENYKTNQDFAFHSKIHDADLLYSCHLCEFKCDAKKEIRAHMMNHNVYKCELCDKIFKFKHGAYRHAEIHLDQNSVQCEICGKNLQRQSLNTHMKLLHSDEFSGVSYDCSICKKAYKYNSSLKKHISFNHRELGIDVSVVCDICGRRISSKSKLQQHLKIHSGEKPYSCTYCEKQFRSKDTMKSHMVVHTGEKPYICGYCGKKFGQSAPYRYHIKTHTGEKSYSCSICGKGFISKANWKLHVKTCDILSNERIKRE

Sequence clustering based on sequence similarity using MMseqs2