Chae015946.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282587.1:21131375-21133312[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.7e-08 1.3e-05 26.5 0.0 4 39 11 46 8 50 0.91
Sequence Information
- Coding Sequence
- atGCCAAAACGAAAAACATGGGACCCTGTTCGAATGAAGGCGGCGGTACAAGCTATGCGAAATAAAGAAATGGGTAGCTATAAAGCATATCGGGTCTTCAATGTTCCACAGACAACATTAGAACGTTATGCTAGAAATGAAGGCACTTCTCCTGATGAGGTAATTAAAACCACAATGGGTAGAAATCCGATTTTACCGCAAGAATTAGAAAAGGAACTGGTTGCATATTGCCttgaaatggaagaaaaatattttggccTTTCGCGAAGAGATGTGCGATGCATGGCTTACCAGCTGGCAAAAGCGAACAACTTAAAGAATCCATTCTCTAAAGAAAAGGAGCAAGCTGGTAAAAAATGGCTCCGAAATTTTATGAGACGACATAAAAAGCTTTCCGTGCGAACTCCCCAAGGCGTTCCCTACGCAAGAGCAAAAGGTTTTACACGCGAAGCTGTTTCGAGGTTCTTTGATATTTACGAACCCATCATGGACAAGATCAAGCATTCCCCATCACGTGTGTATAATTGTGATGAAACGGAGATCACTGTGGTTCAACACAAACATACAAAAGTTGTTGGGTTGAAGGGTAAAAAGCAAATAGGTGCTTTGCAAGTTGCCGAACGAGGTAAACTTATCACTATAGTTACCTGCATGAACCCCGCGGGTCACTTCGTTCCTCCACTAGTTATATTTCCTCGTAAAAATATGAAGCAAGAACTTATGGATGGAACACCCCTAGGCTCCATTTATGCCTGTCACCCTTCAGGATGGATCCAGTCGGAATTATTTACCGATTGgtttaaacattttttaaagCATGTAGAGCCCACAGCAGATAATCCAGCTGTCCTGGTACTTGATGGTCATTTTACACATACCAGAAATATTGAGGTGATTAACCTAGCTCGCAGTAATCACGTTTACATAGTGTGCCTCCCTCCCCACAGTTCGCACAAGATGCAGCCGCTAGATCTTGCTTTTATGTCACCATTTAAAACTTACTATGCACAAGAAATCGAAATGTGGCTTCGAAATCATGCTGATAGGGGAGTGGTAACAGTTTACCAGATTGGGCAGCTTTTTGGAAATGCTTACCGAAAAGCGGCCACTGCTGAAATCGCTGCAAAAGGTTTTGAAAAGGCGGGCTTGTTTCCCTGTGATCGCCATAAGTTTGGACCACACGAGTTTCTTAACACAATTGTTGATGAAACAGTTCCAAATCCACCTGTGTCAACCAGTTCTACAGAGGACATATCTAAACCTGGTCCATCCGGCCTACAACGTCAGAAGTCTTGTTCTGGTCAAAATCAGTTAGACACTCCTGTAACACTGGCAACTCGTAGGCCACAAAAGTTTACAGAAGACATATCTAAGCCCGGTCCTTCCGGCATACAACCTCAGCGGTCCTGTTGTGGACAAAGGCAGCTAGATAGTCCTAAAATGCCAGCAACTCCCAAGCAACCGAAATTTGTTATTCCTAGCGAAATAAGCCCTGTTCCAGTCTTGAATCCAGGCAAAAAAAGTGCCCGTTCCGGATCAGCAGAACATATTAAGGGGACGCCATATAAAACGTATTTGGAAGAGTCACAACaaaagaaatctaaacaaaatccaAAGCCCAATAAAAAGAAAACTGTACTTCCTGTAAAACCAAGTAAGCCCAACAACGGGAAAAAAGTTGACTCTTCAGGAGAATCAGCTGATGAAGAAGACGAAGCCCAATATATGGATGACTCTGCAGACGACCCAATGTCTGATGAAGATGCTGAGTGCCTGTACTGCGATGGTCTTTATTCAGATGACCACGAAGGTGAAGACTGGATTCGCTGCACTGTGTGCTACAAGTGGGCCCACACACTATGCGCGGATCTTGGTCCTAAGGTAGTGGTGTTTAAATGCCATACTTGCAGCagcaaaaaaaggaaaatcatCTTTTGA
- Protein Sequence
- MPKRKTWDPVRMKAAVQAMRNKEMGSYKAYRVFNVPQTTLERYARNEGTSPDEVIKTTMGRNPILPQELEKELVAYCLEMEEKYFGLSRRDVRCMAYQLAKANNLKNPFSKEKEQAGKKWLRNFMRRHKKLSVRTPQGVPYARAKGFTREAVSRFFDIYEPIMDKIKHSPSRVYNCDETEITVVQHKHTKVVGLKGKKQIGALQVAERGKLITIVTCMNPAGHFVPPLVIFPRKNMKQELMDGTPLGSIYACHPSGWIQSELFTDWFKHFLKHVEPTADNPAVLVLDGHFTHTRNIEVINLARSNHVYIVCLPPHSSHKMQPLDLAFMSPFKTYYAQEIEMWLRNHADRGVVTVYQIGQLFGNAYRKAATAEIAAKGFEKAGLFPCDRHKFGPHEFLNTIVDETVPNPPVSTSSTEDISKPGPSGLQRQKSCSGQNQLDTPVTLATRRPQKFTEDISKPGPSGIQPQRSCCGQRQLDSPKMPATPKQPKFVIPSEISPVPVLNPGKKSARSGSAEHIKGTPYKTYLEESQQKKSKQNPKPNKKKTVLPVKPSKPNNGKKVDSSGESADEEDEAQYMDDSADDPMSDEDAECLYCDGLYSDDHEGEDWIRCTVCYKWAHTLCADLGPKVVVFKCHTCSSKKRKIIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00329145;
- 90% Identity
- iTF_00329299;
- 80% Identity
- -