Chae032353.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282593.1:3343796-3344530[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.2e-08 1.2e-05 26.6 0.0 3 41 12 49 10 53 0.87
Sequence Information
- Coding Sequence
- ATGAGCAATGCTAAGAGATTCCAATATTCGGTTGAAGACATGGAACAAGCTGTCAATGCTGTTAAAAATGGAATGCCTACTGCCCAGGCTAGTAAAGTTTTCAAAGTTCCAAGAACTACCATAATAGGAAAAGTACAAGGAAAAGTGCCAATTCAAAGGAAAATTGGCCCCGATACAACCCTAACTAGTGGTGAAGAACAGTTATTGGTGAAATGGATGTTTCACATTGCCAGTTGTGGTTTTCCTGCAACAAAACTGCAGCTTATAGACAGTGTACAATTACTGTTGAAAAACCTAAATAGAGCAAATAATTTCACTAACGGAAGGCCAGGTCGCCACTGGTACGAAGCTTTTATGAAAAGGCATCCAGAACTTTCACAAAGAGTTTCCCAAAATCTAACCAATGCTCGGGCCAGTGTAACTGAAAACAAAATCCGCCGTTGGTTCGAAgaagtcaaaaaatatttatctgaTACTGCCAATTTTTATATAACATCTCACCCCTCTCGGATATGCAACTGCGATGAAAGTGCCTTTTTTCTAAGCCCCAAGAATGATAAGGTTTTAGTTAAGAAGGGCGAAAAAGctgtttattcattcattaacaATGACGAAAAGGAATGCCTCACAACGTTAATCATATGCAGCGCATCAGGAGAAATTCCTCCACCTATGATTGTATATAGCTATAAAAGGGTACCAAAAGCTGTCATTGACAAGATTCCACAACAATGA
- Protein Sequence
- MSNAKRFQYSVEDMEQAVNAVKNGMPTAQASKVFKVPRTTIIGKVQGKVPIQRKIGPDTTLTSGEEQLLVKWMFHIASCGFPATKLQLIDSVQLLLKNLNRANNFTNGRPGRHWYEAFMKRHPELSQRVSQNLTNARASVTENKIRRWFEEVKKYLSDTANFYITSHPSRICNCDESAFFLSPKNDKVLVKKGEKAVYSFINNDEKECLTTLIICSASGEIPPPMIVYSYKRVPKAVIDKIPQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327979; iTF_00847115; iTF_00847440; iTF_00847341; iTF_00025971; iTF_00847277; iTF_00847027; iTF_00416250; iTF_00847424;
- 90% Identity
- iTF_00327979; iTF_00910619; iTF_00025971;
- 80% Identity
- -