Chae046987.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282598.1:6801495-6803402[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-09 6.8e-07 30.6 0.0 3 40 17 54 16 57 0.93 2 2 1.6 3.7e+02 2.6 0.1 29 43 506 520 506 521 0.86
Sequence Information
- Coding Sequence
- ATGGTTGGTACATATATAAGAAAGTCCAACAGGCAATCATGGGCGTCTGATAGTATGGAAAAAGCCATTGAAGCAGTTGAAAATAAAGAGATGGGATGGCTTAAAGCTTCTAAAACTTTTGGAGTACCACAGGCAACACTACGTCGTAgagcacaaaataaaaataaacaaattaaagGTGTTCAAAAGGGATTAGGAAGGTTCCAAATTACATTTACGCCAGATATGGAAAATGAGCTCGTGGAACACATTTTACTCTTAGAATCAAGGCTCTTCGGTGTTACGTGTGATGAGTTAAGGAGCTTAGCTTATCAGTTAGCTGCCAGAAATGGTATCAAGCACCGTTTTAATGCTGAGAGTAAATTGGCTGGATGGGAATGGTTGAGTGGATTCAGACAGCGACACCCTAACATTTCTTTGAGAGAACCGGAGCCAACATCGATGGGAAGGGCTCAAGCTTTTAATAAGCCACAAGTGGCCAAGTTTTTTAAACTTTTCGATGACACggtcaaaaaatacaaaataccgtTAACCAGAATTTGGAATGTTGATGAATCGGGGCTCTCAACCGTTCAGAGACCACAAAAAGTATTTGCTCAAAAGGGAAAGAAGCAAGTTGGAGCTATTACTAGCGCAGAGCGCGGTCAACACGTTACCGTTGTTTGTTGTATGGGTTCTGGTGGGGGTTTTGTACCACCATCCTTAATTTTTGCTAGAAAGCGCTGGAAAAATGAATTGATTGATGGTGCTCCACCGGGAACCCAAGGTTTAATGAGTGACTCTGGATGGATGAACGGAGAGGCCTTTTTACAGTGGCTCAATCACTTTATTAAACATGCAAATCCTTCCCCAGAGAACAAGGTGCTACTTCTACTCGATGGGTACAAATCccataaaaatttaaatgtattaatgttagcaaaGGAAAAGGGAATAATAATGCTGTCCTTTCCTCCTCACTGCACGCACCGCATGCAGCCTTTAGATATATGTTTTTTTGGTCCGCTGAAAACATATTATAACCAAGAAGTTACAAAGTGGCTTAAAAACCACCCAGGAAGGGTAGTGACCCAATTTCAAGTAGCAGAAATATTTGGAGTAGCTTACGGACAAGCAGCTAGCATACAAAATATAGTCAGTGCTTACAAAAATTCTGGTATAAATCCTTACAATCCGGATATTTTTCCTGATCATCTTGTTTGTCCTGCTGAAACTACCAACCTGCCATTGGAAAACATTCAAGAACCTAATGAAGCAGCGGCTGTTCCTCCAAACACACCAACACGACTTCTGAATACACTACCACGACCTCTTAATACACCACCACGACAACCACCAGTAAACGCATCACCATCAGCAAACCCTTCTTCAATACAATATTTAACAGTTAACGCAACATCGTTAGCAAACTCTTCTTCAAAACAAGACTTGCCACAGTCCgataaaaccaaaaatattttatctccTGTTGATGGAAATGTACGAGTTAGGCCTTCGGATATCACGCCATTACCTTCCACTTCCACCATTCAGCGAAGGAAAAGAAACCATGAAGGAGCACAGATTTTCACAGAGAGTCCTTTTATAGCCGAACTCAAGGCAAAAGAAGCTGAAAAAAAAGCAGTTGAGTCAAGGCGCGCTGCAAAGAGGGCTAAAAAACAAATAGGTCAGCTAATGGAAACACAAAATTCCgatgaagaaaatgagaatgcTGAAAATGAGAACGCCGATTTCGATATTGATGATGAAGATGCTTCATGTTTATACTGCATAGATCTATATAGCAGATCTAAACCAGGAGAAGCCTGGTTACGTTGTTCACTATGTTCACTATGGGCTCATGCAGAATGTGCTGGGTTATCCAAACGTGCAAAATCATTCACTTGCGAAATATGTAAACCACactaa
- Protein Sequence
- MVGTYIRKSNRQSWASDSMEKAIEAVENKEMGWLKASKTFGVPQATLRRRAQNKNKQIKGVQKGLGRFQITFTPDMENELVEHILLLESRLFGVTCDELRSLAYQLAARNGIKHRFNAESKLAGWEWLSGFRQRHPNISLREPEPTSMGRAQAFNKPQVAKFFKLFDDTVKKYKIPLTRIWNVDESGLSTVQRPQKVFAQKGKKQVGAITSAERGQHVTVVCCMGSGGGFVPPSLIFARKRWKNELIDGAPPGTQGLMSDSGWMNGEAFLQWLNHFIKHANPSPENKVLLLLDGYKSHKNLNVLMLAKEKGIIMLSFPPHCTHRMQPLDICFFGPLKTYYNQEVTKWLKNHPGRVVTQFQVAEIFGVAYGQAASIQNIVSAYKNSGINPYNPDIFPDHLVCPAETTNLPLENIQEPNEAAAVPPNTPTRLLNTLPRPLNTPPRQPPVNASPSANPSSIQYLTVNATSLANSSSKQDLPQSDKTKNILSPVDGNVRVRPSDITPLPSTSTIQRRKRNHEGAQIFTESPFIAELKAKEAEKKAVESRRAAKRAKKQIGQLMETQNSDEENENAENENADFDIDDEDASCLYCIDLYSRSKPGEAWLRCSLCSLWAHAECAGLSKRAKSFTCEICKPH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00329142;
- 90% Identity
- iTF_00329106;
- 80% Identity
- -