Basic Information

Gene Symbol
retn
Assembly
GCA_958298965.1
Location
OY282600.1:1401969-1414911[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.8e-19 1.3e-15 59.3 0.0 18 89 5 74 1 74 0.93

Sequence Information

Coding Sequence
ATGACGGCAAGATCTCCAATTAATCGACTACCCATAATGGCCAAATCTGTCCTTGATCTCTATGAACTCTACAACCTGGTGATAGCTAGAGGAGGATTGGTTGATGTGATAAATAAGAAGCTTTGGCAGGAAATAATCAAAGGTCTCCATCTGCCTTCTTCGATTACTTCGGCGGCGTTTACCCTTAGGACACAATACATGAAATATCTGTACCCGTACGAGTGCGAGAAGAGGCGGCTGAGCACCCCCGTGGAACTCCAGGCCGCCATTGACGGCAACAGACGCGAAGGGCGGCGGAGCAGTTACGGCCAGTACGACAGCATCCAGCGGTCTCCTAATCCGTCGATGCAGATGGCGCCGCTGTCGATGGTGacgcagcagcagcagcagctgGCGGCCCGCATGATGGGCGGCGGCATCAATCTCACCAACGGCGCGCATCATCCTAGTCACCCGCAGCCTATGGGACATCTGAACGGTGGGCCCATCCCAGGCATGGCACCCAGCGACTTCGAGGCCCGCATGAAGGAATACCTCAAACTCATCAACAAAGACATGTTACCCACGATGGCGACGACGCCCAACAGACCGGGCGACGTTTCGCCCCCCAGCACCACCTCCCCCTTCAATCAATTGGACATGACGCGCATGGCTCTCTGGAGCATGTACAATAACAACCAGCCGCCCATAGAACCTCAGAAGGAGCCCATTAATCTCTCGGAACCCTCGCAGCCTTCTATTAAAAGAGAGCAGGAGCACAGAGAGTCACCCCCGCCGCCCAAGAGGATGCAAAAAGAGGAGGAGGAAGAGATGGAGATGCACCCCGCGCCTAGGAGCTCGCCGTCCTCTACACATATCAAAATTAATTCCAGAGgTGATTCTCGTAACGGAGATAATTCCCTAGTCGTCAGTATGGAAATCAACGGCGTAACGTACCAAGGGGTGTTGTTCGCGCAAAGTTCCTCGCCCGGGACGAGAACGGCGCTGACGTCGTAA
Protein Sequence
MTARSPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPVELQAAIDGNRREGRRSSYGQYDSIQRSPNPSMQMAPLSMVTQQQQQLAARMMGGGINLTNGAHHPSHPQPMGHLNGGPIPGMAPSDFEARMKEYLKLINKDMLPTMATTPNRPGDVSPPSTTSPFNQLDMTRMALWSMYNNNQPPIEPQKEPINLSEPSQPSIKREQEHRESPPPPKRMQKEEEEEMEMHPAPRSSPSSTHIKINSRGDSRNGDNSLVVSMEINGVTYQGVLFAQSSSPGTRTALTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-