Came027236.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysolina americana
Gene Symbol
ush
Assembly
GCA_958502065.1
Location
OY293413.1:75614933-75621664[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00088 0.15 14.5 0.1 1 20 136 155 136 157 0.95
2 9 0.00017 0.029 16.7 1.5 1 23 202 224 202 224 0.99
3 9 0.0087 1.5 11.4 0.9 3 21 252 270 251 271 0.92
4 9 0.053 9.2 8.9 2.7 2 21 553 572 552 573 0.93
5 9 0.0065 1.1 11.7 0.0 3 20 612 629 610 631 0.91
6 9 0.76 1.3e+02 5.2 0.1 2 23 667 688 666 688 0.95
7 9 0.0051 0.88 12.1 1.4 1 23 694 716 694 716 0.99
8 9 0.098 17 8.0 2.9 1 23 773 796 773 796 0.95
9 9 1.8 3.1e+02 4.1 0.5 3 20 879 896 878 898 0.92

Sequence Information

Coding Sequence
ATGTACGGGTGTGGAAGAGAACGAGAGGTGGGAGATTGGTCCAGTGACCCAGCAGACCCTACTGCATCAGCGAAATCATCTCCTCCAACGTCAAAGAAACCTTCTTCCGATATACAAGAAGATGAATCCCAACATTCGTCAAAAATCGAGTCGGAGGAAAAGACGCCACGAATTCGATTGAAAGCGAATCTAGCCACTGACCCAGCGTTGCATTCACAGACAATATCAATTTCGAATCTGAAAACAGACCAGGAACAATCTCCTAGCGAATACTTGGCAAGTTTACCGACGGCTCTACAGACTGCTCTGTCGAGAGGATTCTTTCTACCAAATATTATTGCTGGAACCGAGGTGTCAACAAGGTCGACGGAATCCCTAGAACCCAAACAACCAATCGTACCGTTATTTCAATGTCCGCCGTGTGGAATCAGGTTCTCTTCTTTGAGCACGTTAGAGGCTCACCAAACCTATTACTGTTCTCATAGAATCAATAAATCAGCTAATGATGACGAATCAAAGTCAGCTGGACCCGACGCAAGTGGAAACCAGTCGGATGTAGATGCGTCGGAATCGGCTTCAAAAAACATCCGTGTCGGAAAACAGTATACGTGTACGCAGTGTTCATACAGTGCCGACAAGAAAGTCAGCTTGAATCGACATATGCGGATGCATACTGTCTCTCCAAGTCCTAGTCCTAGTACGATAAACCCAATCCCCAACGGTGAATCGAACAGCGAAAATCAAGATCGTTACTGTGCAGAATGCGACATTAGATTCAGTTCACAAAAAACATTTCGGGCTCACAAAATGCATTACTGCAATTCCAGGCACATGATCAAACCTCCGATATCAACCACCAAAACTACTTCTAATACATCCGGCTCATCTCCAACTTCTCCCGCAGAGGCTACTTCTTGCAAAACTCCCCCGTCCCCTTCCAGTTCGGGCCCACCGAATCAGCCTTTCTTAGCGCTACCAACCAATCCCATAATTATTGTGCCATATTCACTGTTTAGAAGTGCGAGTGTTTTGCCAGGTCTCTCTTCCGCCGCTGGCCTACCAAACCCTGACACTCCCTGCTTTCTTTTACCAAACGGCACTCTTCAACCAATGACGAATGCCTTGACTGCGAATCAATCCAATCAACAACACGAGCTTCTGAGGAATGTGAACAGATCCAAAGAACCCCTAGTTATCAGGGAAACTTCATCAGCGCCCTTGGACTTGAGTGTAAGAAAATCTCCTGAAATCAACGATCTGGTTATCGACCTTGGCGAcgaacaagaaaaagaaaaccGGAAACGATCCCCTTCGCCAGAAAAAATTGAGTGTGTGCCGTCATTTCATTGCTCCCCGCCCACAACGCCAGTTTCGCATACCAATTCGTCTCCTAGCCTAAGTATTTCACCAAAAAGAAAACTGGACGAAACATCGAGGAGTAGTAGCCCTAAGCGTTTGAAATCTCTAACTAAGTCTGATAAAGTAAGAACGAGTCCGGAGTTGAACAATTCATCACAATTTGATAGTTCTTCATTGCACCCCTTGTTGATGCGAGGATCCTTACCCCTATTTCCCCCTGACGTACAGATGAGATTGACTGAAATGCCTGCCCTACAACCTGTAATGCCCCAGGTTTTAGTAAAACAAGGAGTATCGAAATGTAAAGATTGCAATATCGTGTTTTGCAAACTCGAGAATTATGTAATACACAAGAAGCATTACTGCTCTGCGAGGTCACAGGAGGAAGATAGTTGTAAAACTTCGGGAAGTCCTCCTGCCAGTCCGAGGAGTACCGGAACAACTAGTCCTGCTGGACAGTACCAGCAGTTAATCTGCCTAGCATGTGGTATCAAATTTACCTCACTTGATAATCTCAACGCTCATCAAGCGTACTATTGCCTGAAACGAGGAGAAATGGATCCGAGGAAGTGTGGAAAGTGTAGAGGAGTCATCGAACCGGGTCATCAATGCATAACAAACCCATCTTTCGCGGGGTGGAAATGTCCTTGTTGCGACGTCATCAGTCCAACGGCAAGTGCAGCTCAAAGGCATATGGATTCCCATGCAGGGATCAAAGCTTACAGATGTACCATTTGCAAATACAAAGGCAACACGCTGCGAGGAATGAGAACTCATATCAGGATGCATTTCGACAAACGATCCCCCGATCTACAGGAGGAAAAATACATAACATACATTCTTGAAGACGAAGCTGCCAGCACCGTCGAGGTGAATGTAGTTCCATCCCTCGGTCCTGCTGGTGCTATGGATGATCAGTCAGGATCCCCCAACGCTGAATGTCTCCTAGAATCCCCCCACCATTGCACCCAGTGCACCTACAGCTCAGCATACAAAGCCAACGTCCTGAGGCACATAAAACTTGTTCACGAAAGTTCGCACTCGGATgattcagctgtgaatggttcAGATGAGAAAGGAATCAGATCTATGCCACTGCTGGAGGAGGACGAGGAAATATTGGTGAAAAAAGAAGCGATGGAACCGGAAGTGATCATAGCGCATGACGAGGATCATATTATAAAAGAAGAAGCGATAGAACCTTCCTCGAATTCGAAAACTGAGGAGTCCGAAGAAGAAATTGTTCAAGGCACGGCAAAGTCTGGAGGCAGATATTGCAAGTCGTGCgatatttatttcaactatTACACAACGTTCATAGCACATAAACAATTCTATTGTTCCAGCCATGCCGGAGAAGTGACGATGATGTCGAcgaacaacaataataataatccgaCGAGCCGTACGTCAGAAGAAGCATCAGTACTATGA
Protein Sequence
MYGCGREREVGDWSSDPADPTASAKSSPPTSKKPSSDIQEDESQHSSKIESEEKTPRIRLKANLATDPALHSQTISISNLKTDQEQSPSEYLASLPTALQTALSRGFFLPNIIAGTEVSTRSTESLEPKQPIVPLFQCPPCGIRFSSLSTLEAHQTYYCSHRINKSANDDESKSAGPDASGNQSDVDASESASKNIRVGKQYTCTQCSYSADKKVSLNRHMRMHTVSPSPSPSTINPIPNGESNSENQDRYCAECDIRFSSQKTFRAHKMHYCNSRHMIKPPISTTKTTSNTSGSSPTSPAEATSCKTPPSPSSSGPPNQPFLALPTNPIIIVPYSLFRSASVLPGLSSAAGLPNPDTPCFLLPNGTLQPMTNALTANQSNQQHELLRNVNRSKEPLVIRETSSAPLDLSVRKSPEINDLVIDLGDEQEKENRKRSPSPEKIECVPSFHCSPPTTPVSHTNSSPSLSISPKRKLDETSRSSSPKRLKSLTKSDKVRTSPELNNSSQFDSSSLHPLLMRGSLPLFPPDVQMRLTEMPALQPVMPQVLVKQGVSKCKDCNIVFCKLENYVIHKKHYCSARSQEEDSCKTSGSPPASPRSTGTTSPAGQYQQLICLACGIKFTSLDNLNAHQAYYCLKRGEMDPRKCGKCRGVIEPGHQCITNPSFAGWKCPCCDVISPTASAAQRHMDSHAGIKAYRCTICKYKGNTLRGMRTHIRMHFDKRSPDLQEEKYITYILEDEAASTVEVNVVPSLGPAGAMDDQSGSPNAECLLESPHHCTQCTYSSAYKANVLRHIKLVHESSHSDDSAVNGSDEKGIRSMPLLEEDEEILVKKEAMEPEVIIAHDEDHIIKEEAIEPSSNSKTEESEEEIVQGTAKSGGRYCKSCDIYFNYYTTFIAHKQFYCSSHAGEVTMMSTNNNNNNPTSRTSEEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00330118; iTF_00756176;
90% Identity
iTF_00330118;
80% Identity
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