Came001288.2
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293410.1:20379556-20404329[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.14 24 7.6 0.5 2 23 809 831 808 831 0.91 2 12 0.58 1e+02 5.6 0.1 1 19 877 894 877 899 0.74 3 12 0.031 5.3 9.6 0.5 2 20 929 947 928 949 0.92 4 12 0.0023 0.39 13.2 1.2 2 23 960 980 960 980 0.98 5 12 0.00028 0.048 16.0 1.5 1 23 982 1004 982 1004 0.96 6 12 0.1 18 8.0 0.1 3 23 1013 1030 1012 1030 0.94 7 12 8.7e-05 0.015 17.6 0.7 2 23 1039 1061 1039 1061 0.96 8 12 0.016 2.8 10.5 0.4 1 23 1094 1116 1094 1116 0.97 9 12 0.3 51 6.5 1.8 2 23 1160 1181 1159 1181 0.97 10 12 0.13 22 7.7 3.7 1 23 1187 1209 1187 1209 0.97 11 12 0.0056 0.96 12.0 0.2 1 23 1217 1239 1217 1239 0.98 12 12 0.0024 0.41 13.1 1.9 1 23 1246 1269 1246 1269 0.95
Sequence Information
- Coding Sequence
- atggtAATGTGTTGGGCTCCAGGATGTCAACATTATAACCAGAGAGAAACGTGCAGGTTTTATAAGTTTCCGAAAGATCCTCACTTGAGGAAAAAGTGGATTTCAGTAGTGAGaagagATAAAGAACCTGGTCCAGGAGCATTTTTGTGTAGCTGTCATTTCATTGACGGCAAAAGAGAAAATGGCCCCGAGTTGTTTGAGCACAATCAGAATAAGAAACGCTCCAACTTCTCAACGCCTAAGAAGAGAAAACGAGCAGCGAAAAAATTGAGAGACGGTGTTCCAACATCTTCCAAAATTGCAAGATTTCCTCACGATGAACAATTGCTTCAAATGTGGAAGGAAATCACCGGAATAGGAAAGGTTTTTAAAGGAGCCTGGATATGTTCGGAGCATTTCGAATCTTGTGATCTAAAGGTTTCTCCAACTGGTACAAGAAGATATCTGAGACAAGGGGCAAAGCCCATACGTAAAAGGAAAGAGAAGTTGAGGGACAATGATTCCCCAATCACTATTGAAGATTCATGTAGTCCTACTCCTAGAGACAATGATTCAGCACATGAAAATGAGGTGAACATTTTGGAACCGATGTCGAAAATGTCAGAATCAAGTTCAGGTGCTGTTGCCGCGCCAAAATTTGGTTTACGGAGTCGCAGTGATAATTTTCAGGATATGTTCCAGAGGAAAGTACGACACGAGATTTTAACTGATATTGCCAGAGGAAGAATGCAGTTACAAGAgtCTTCGCGGCATAACCCATCAAAGCAAAATGCAACTGAGCCACAAACACTCTCAGCAGAGCCCCCAGCAGAGCCCAGCAGTAGTTACAAGTCTTCAAGGTTCTCTAAGAAGCAAAGTGCAAAATCTGGAGCAGCACTCAACCAAAAAACCCAAGTTTTTTCCAAGAAAAGTCATCTAAAAGGACGGTCCCCACGCAGTAGCACAAAACGTCCTCTAATTAGTACAGAAAATACACCAAATCCCGTTGTCACTCAACCAACTCCGGCTgcagtgaaaaattcatctgcgATGTATTCGCAAAGTGCATCCAAAACTTCAGTCATCTCGCAAAATGCCCCTCAGACTTTGGTGCACTCACAACAAACCCTTCCAAACACTTTTAATCCTGTGAATACTATCAGTTCGCAAAATGCTTCTCAGACTGTGGTGCACTTTCCACAAACCCTTCCAAACACTAGTTATCCTGTGAGTTCTTTCATCTCGCAAAATGCTCCTCAGACTCTTGTGCACTTTCCACAATCCCTTCCAAACACTAATTATTCTGCGAATTCAATGTTCCCACAAAATGTCCCTCAGACTATGCTGCACTTGCCACAAACCCTTCCAAACCCTAATAATAATCCTGTGAAATCTATCATAATTATTCCACAGTCCACGGGAGTTACTCCAAACGGGTTATTTCTGTTGCCGCAAAATTTATCACATCAGAATGTAATTCTGCCGCAGCTGAATTTGCTGTCTTCACACCAACAAACTAGCCAAATTGGTGTCGTTGGTAATACTGTTCAAGTTAGCGAACATCCCCGACTCAGTAATTCCTTTACGAATACTACCGCTAGTAGAATACGGCATGTGGACAGTAATATCACATGCCAACTCAGTAATTCGTCCACAGATACTGCTAGTGAAAATAGTCATTTTAATCATGAGTTAACTTCCAAGACTATGGAGGAAAGCTTTTCGAATAGTTCCAGTAAAAAGAAGTCAAGGTGCCGCACATGCTTGGATAGTGTCTCGAATCAGTTGGAACAGGCTTTTATATCAATGATCTGTTTTGAAGAGAAAACTGTTAGAGAGGGCTTGCTGCAGCTTTTGCCCGAGATGAACTCTACTctttctgatgatcaatttgTCTGCGCcaaatgttttatgttattgAGAAATACTTTGAAGTTCATGAAGAGATGCCTGGAAGCGGAAAGTGTCATAGCAAAAGATCTTAAAAGTAACTCTGAGGAAGTTCTGGGAAATAATTCCATAGAAGATGGTTATGACCTCGAGGAAAGTAATATCTATGAAAATGTCGGTCTTGATGAAGatattgatgatgatgaagaagaaaataacTCAGAATTTGAGTTGGATCCTAATATCGAGGAGCAAGATTATATTTTGAACGGTATTACTAATTTAATAAGAGGAAATGAAGGATTGAAAAGTGATgattccaacagaaaacaatcaGATCTGAAAAATGCTGTAATTAAACACCTGAATTTCTTACCATTAGAACATGCCAAAGTTCGTAATCACAACAGTATTCTCTCCATTGGGAAAGTAGAACCCGATTTTATTTTCTCgctacaaaaatacaaaatcaagcTGTTACAGAATTGCtcgaaatttgatgaaaatattttcacgaaCAAACGAGTGCTCCTACTGGGGGGTCATACAGAGATAAAATGTCTTTTATGCGAGGAACACTTCAATACCGAAGCAAAAATGCAAAACCACATAACGGACGTTCATGGCTTGTCAAAAGCTTTCCTGATGGAGACGTATTGTTATCAATACAAACCTGGCTCTTCGAACATATGCGAGGCTTGTGGCAAAGACTGTGGGCATGGAGCACATAAAAAGGCCCACTTGAAGAGCTGCTATGTGTTTCCGTGTCCGTACTGTGATGAATTGTTCACTTCAGTTCAGTTACCGAACCATACTTCGGCTGAACATAACGATCCCAAACCCTTCAAATGTGTTCGCTGTAAACAAGAGAAAGTTAACTTTGTGCAATTCAAGTCACATTCGTGTAACTCTCTTATATGTGAAAAATGTGGTAAGAATTATTTTGACAAGAACAAATTCCGCATCCATACTGCTAGGTGTAGTAATCCAGAAGAGATTGGTACAAGGAAATGCCCCGAGTGTAAACAAAGattcgaTGAGAGTTCATTCTCAAGTCACATCAAAACACACACATTTCCATGTTCAATTTGTGGAAAGATATTTCACGGCAGAAGTAACTTGTCTCAGCATGAATACAAACATCGTTGTTTGAAGAAAAGTGAACCATGTCCTTTATGTGgaaaagTTGTTGTGTATTTAAAGCAGCATATGAGAGTTCATGACAACAATCGAATCAAACAGGCCAAATGCTCCCAGTGTCCCGAATCATTCTTTCAGAAAGTTAGTCTCATGAGACATATAAGGGCATATCATACGGTATCTAGCATTGTGTGTGCTAAGTGTGGTACACTTTGTAATGAAGccaatataaaaaatcattatgacTCACAGCATCCACATGAAACAGTATTCAATTGTGCGCAATGTGAAGCCACATTCACTCAAATTGCCTTCCTCAAACAGCATGCTAAATCGCATGCAAGTGAGTTGAGAGAAGTTGAAATGGATACAAAATCTAAAATGCCTAAAAGATCAAGACTTCCCCGATGTGACATAGGCTTCGTGAATAAGTACAATATCAGAATCAAAGCACCtgaaacACCAATAACCTGCAAATACTGTTTGAAAACGCTGAAAGGCTTACTTCATTATAGGATTCACCTTGAAACACATTTGAAATTGTATCGGTATAAATGTAGATTTTGCGAAATGACCTATTCCTCTCGTACAAATCAATATAGGCATGAAAAGTTACATTTTAAGGATCCAAACTATAAGTTCAGATGTAATGAATGTTGGAAAATCATGTCTTCTCAAGAAGAATTGGATTCACATATGGTTCGCCATGCTGACAAACCAAAGAGGTATCAGTGTGGAGAATGCTCTGAACTATTTTGTCGTGAATATCAGCTTCGATCTCATCTGATAAATACACACACCCAACAAGAAGAAATGGAGGAAGCAAGAGACGAGATAATCAAAGATGCCTTCATGGATTTTGCTgttgaatattaa
- Protein Sequence
- MVMCWAPGCQHYNQRETCRFYKFPKDPHLRKKWISVVRRDKEPGPGAFLCSCHFIDGKRENGPELFEHNQNKKRSNFSTPKKRKRAAKKLRDGVPTSSKIARFPHDEQLLQMWKEITGIGKVFKGAWICSEHFESCDLKVSPTGTRRYLRQGAKPIRKRKEKLRDNDSPITIEDSCSPTPRDNDSAHENEVNILEPMSKMSESSSGAVAAPKFGLRSRSDNFQDMFQRKVRHEILTDIARGRMQLQESSRHNPSKQNATEPQTLSAEPPAEPSSSYKSSRFSKKQSAKSGAALNQKTQVFSKKSHLKGRSPRSSTKRPLISTENTPNPVVTQPTPAAVKNSSAMYSQSASKTSVISQNAPQTLVHSQQTLPNTFNPVNTISSQNASQTVVHFPQTLPNTSYPVSSFISQNAPQTLVHFPQSLPNTNYSANSMFPQNVPQTMLHLPQTLPNPNNNPVKSIIIIPQSTGVTPNGLFLLPQNLSHQNVILPQLNLLSSHQQTSQIGVVGNTVQVSEHPRLSNSFTNTTASRIRHVDSNITCQLSNSSTDTASENSHFNHELTSKTMEESFSNSSSKKKSRCRTCLDSVSNQLEQAFISMICFEEKTVREGLLQLLPEMNSTLSDDQFVCAKCFMLLRNTLKFMKRCLEAESVIAKDLKSNSEEVLGNNSIEDGYDLEESNIYENVGLDEDIDDDEEENNSEFELDPNIEEQDYILNGITNLIRGNEGLKSDDSNRKQSDLKNAVIKHLNFLPLEHAKVRNHNSILSIGKVEPDFIFSLQKYKIKLLQNCSKFDENIFTNKRVLLLGGHTEIKCLLCEEHFNTEAKMQNHITDVHGLSKAFLMETYCYQYKPGSSNICEACGKDCGHGAHKKAHLKSCYVFPCPYCDELFTSVQLPNHTSAEHNDPKPFKCVRCKQEKVNFVQFKSHSCNSLICEKCGKNYFDKNKFRIHTARCSNPEEIGTRKCPECKQRFDESSFSSHIKTHTFPCSICGKIFHGRSNLSQHEYKHRCLKKSEPCPLCGKVVVYLKQHMRVHDNNRIKQAKCSQCPESFFQKVSLMRHIRAYHTVSSIVCAKCGTLCNEANIKNHYDSQHPHETVFNCAQCEATFTQIAFLKQHAKSHASELREVEMDTKSKMPKRSRLPRCDIGFVNKYNIRIKAPETPITCKYCLKTLKGLLHYRIHLETHLKLYRYKCRFCEMTYSSRTNQYRHEKLHFKDPNYKFRCNECWKIMSSQEELDSHMVRHADKPKRYQCGECSELFCREYQLRSHLINTHTQQEEMEEARDEIIKDAFMDFAVEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00328154;
- 90% Identity
- iTF_00328154;
- 80% Identity
- iTF_00328154;