Came001836.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysolina americana
Gene Symbol
zag-1
Assembly
GCA_958502065.1
Location
OY293410.1:29138818-29140251[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00076 0.13 14.7 3.5 1 23 97 120 97 120 0.96
2 10 0.0001 0.017 17.4 3.5 2 23 188 210 187 210 0.95
3 10 9.1e-05 0.016 17.6 2.7 1 23 216 238 216 238 0.98
4 10 0.0029 0.5 12.9 3.8 1 23 244 266 244 266 0.96
5 10 0.00028 0.049 16.0 0.4 1 19 272 290 272 292 0.94
6 10 9.5e-06 0.0016 20.7 0.9 1 23 303 325 303 325 0.98
7 10 0.00046 0.08 15.4 8.4 2 23 332 353 331 353 0.96
8 10 0.0021 0.35 13.3 4.5 1 23 359 383 359 383 0.97
9 10 4.8e-05 0.0082 18.5 2.2 1 23 397 419 397 419 0.96
10 10 0.21 36 7.0 8.7 1 23 425 448 425 448 0.97

Sequence Information

Coding Sequence
ATGGGCATCCAAGAATTTTGCTGTGTAtgcataaaaaaaagttttcaattgaaaaacattACTGAAACCAATGGACATAAAGAAAGCTACAAACAGAAACTATCACTATGTGCACCTGATCAGaaatggtGTGAAAATTATAACATTTGCCAAAATTGCATTGAAAAACTAGAGGCTGCATATGATTTTATACAGATTTGCTTACTAAGTGAAGAATTGCGAAAGGAGCAGCTATCAAAGTTGGAACGAAATGGTTCTAAGAAAGAAGTGGATGTCATGGAGCAATCACATCAATGTGACTATtgtaaaaaacaattcaaattggAGCGGTCCCTGAAATTGCATATTACAagaatacataaaaaacaattcaataatGACATTCTTGAGATAGATCTGAAAATAGAAGAGCAAGAAGTTAAAGTagaagatgaagaaaaagaTGAAAAAGAAGACACCCCTGAACATTTCAGTGACAATGGTGAAAACTACTCTACTGAAGATGAAGTTAAACCACAGTTAGAAACAAAGAAGAAATATAACAAACGAAAACATCCTTTAACTTGTGAGTATTGTGGAAAAATATTCCACAGGAGACAACATTACTCTGCCCATATTCGTGCCAAACATACTTTTGAAAAGCCATACCAGTGTAACATGTGTGATGCAAAGTACACAAACTCTCATAGTTTATTAGTTCACAAAAGGAACCACAACAATGAAAAACCTTTCATTTGTTCTTACTGCGGTAAGAGCTTTGTTTGTTCTGGTGACTTGTATCACCACAGTAAAATCCATTTGAACAAAAGAGAATATAAGTGTACCTTATGTGATAAAAGTTTTAATACTGCAAGTATATTGAGAACTCACAAAATTTGTATGCACACAGAGCCCAAAGAATGGAAATATGTTTGCAATTATTGTTCTAAAAGATTTCCTATAAATTCTAGTTTGGCAACTCATCTTAAGAGACATACAGGTGTTAAGGAATGTTGCTGTCACATATGCGagaagaaattttttgataagtcTGACTTAGTGAAGCATTTAAAAAGTCATACTAGTGAGCGATTATTTAAATGCAACATTTGTCAAgataaagaatataaaaatcatcacGGCCTTAGAAAGCATATGAAGATTATCCACGACATTGGCACAATTAAAATTGTTAAGCCAGAAAAGAAATTCTTATGTCCAATGTGTCCAAAAATATTTGCTTTCAATAACAAGCTTCAAAAACATTTGTGCAcccacactggtgaaaaaccctTCAAATGCCATTGTTGTGATAAGAAATTCATTGATAACTATTACAGAAAAATCCATTTGAAGAAGAAACATAACATTGAATCAACTGAAGATTACACTTGA
Protein Sequence
MGIQEFCCVCIKKSFQLKNITETNGHKESYKQKLSLCAPDQKWCENYNICQNCIEKLEAAYDFIQICLLSEELRKEQLSKLERNGSKKEVDVMEQSHQCDYCKKQFKLERSLKLHITRIHKKQFNNDILEIDLKIEEQEVKVEDEEKDEKEDTPEHFSDNGENYSTEDEVKPQLETKKKYNKRKHPLTCEYCGKIFHRRQHYSAHIRAKHTFEKPYQCNMCDAKYTNSHSLLVHKRNHNNEKPFICSYCGKSFVCSGDLYHHSKIHLNKREYKCTLCDKSFNTASILRTHKICMHTEPKEWKYVCNYCSKRFPINSSLATHLKRHTGVKECCCHICEKKFFDKSDLVKHLKSHTSERLFKCNICQDKEYKNHHGLRKHMKIIHDIGTIKIVKPEKKFLCPMCPKIFAFNNKLQKHLCTHTGEKPFKCHCCDKKFIDNYYRKIHLKKKHNIESTEDYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00330003;
90% Identity
iTF_00330003;
80% Identity
-