Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293419.1:59411201-59413241[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 6.2 1.1e+03 2.4 0.1 2 10 279 287 278 291 0.85

2 10 0.00013 0.022 17.1 1.4 1 23 341 363 341 363 0.99

3 10 0.00042 0.072 15.5 2.9 1 23 369 391 369 391 0.98

4 10 2.6e-06 0.00045 22.4 2.4 1 23 397 419 397 419 0.97

5 10 0.00024 0.042 16.2 0.9 1 23 425 447 425 447 0.99

6 10 1.3e-05 0.0023 20.2 1.1 1 23 454 476 454 476 0.98

7 10 1.4e-06 0.00024 23.3 0.6 2 23 483 504 483 504 0.97

8 10 1.6e-06 0.00027 23.1 0.4 1 23 510 532 510 532 0.99

9 10 7.5e-07 0.00013 24.1 2.9 1 23 538 560 538 560 0.99

10 10 4.1e-08 7.2e-06 28.1 0.8 1 23 566 588 566 588 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	6.2	1.1e+03	2.4	0.1	2	10	279	287	278	291	0.85
2	10	0.00013	0.022	17.1	1.4	1	23	341	363	341	363	0.99
3	10	0.00042	0.072	15.5	2.9	1	23	369	391	369	391	0.98
4	10	2.6e-06	0.00045	22.4	2.4	1	23	397	419	397	419	0.97
5	10	0.00024	0.042	16.2	0.9	1	23	425	447	425	447	0.99
6	10	1.3e-05	0.0023	20.2	1.1	1	23	454	476	454	476	0.98
7	10	1.4e-06	0.00024	23.3	0.6	2	23	483	504	483	504	0.97
8	10	1.6e-06	0.00027	23.1	0.4	1	23	510	532	510	532	0.99
9	10	7.5e-07	0.00013	24.1	2.9	1	23	538	560	538	560	0.99
10	10	4.1e-08	7.2e-06	28.1	0.8	1	23	566	588	566	588	0.98

Sequence Information

Coding Sequence: ATGAACCCAAGTACAAAATTACCCTTATCCTTACTGGATTTTCCAGATGTGTGCAGAGTTTGTTTGTGCCCAGAGGATTTGGAAtcatttgaagaagaaaatatgatggaaaaattgtttcttaAGATCACTGACATTGTTGTAGAACCAATAACTATTCTCCCAAGAAAAATATGCAAGGAATGTCTCAATACactcatagatatttcagtgtTCATTGATATATCAAAACTCAATGATGCAACTCTCAAAAAAGGTTTGATGAACAGGGAAGacatagaaaataattcaaatgaatCCAAGAAGACTTTGCCTTTCCATTCACCTTCCACTTGCAGATCATGTTTAGAAAATTGCGGTTTGAATTCAGTTGAAGGCAATCCCTATTTGTGTTCTTTATTTCAACAGATCACAGATATTGCGATGAATAGTGATATCCCTCTTCTGAACAATATCTGCTCTAAATGCCTTGAAAAACTAGAACAAATCTCCGCATTTATCGATTTATCAAGGAGAAACAATGCAACTCTCCACCAAGCATTCATCAACAAGCATGTGAAacatgaaaatactgaaaatggtTCTGAAGTGAAAGAATATGTAGAAATATGTTCTGGTGACACTGAAGCAGAAACTGCATCAGTGCCTTTTGAGGAAGTCAAATTGGAATGTTTtgcagaagaaaaatatttcacattCGAAGAATTCACAGTTCCTACAGACCAGATCAAATCAGAAACTTTTGTTAAGGAAGAACTTGTCAGTGATGGAATACAGATGAAAATTGAGCTCAACTCTAAAAATGAATGGCTCAATATTGAGACTGGAAAACTAACTTGTGATGAGTGTAACAAGGATTATCcagagccaccatcatctgaAAAAGACTATTTTGGTGAATATCCAACACAGTGCAATAGATGTGGAAAAGGGATTTTAAAAAAACAGCAAACCAAGGATGATGCAGCTCAAGCCTTGAAACTCAAGAAAAAACACTTAAGCAAGAAACGGAAACCTCCCTTTCAGTGTGAAATATGCTCCAAAACTGTCATGTTGTACAGTAGTCTGAGAAATCACATGAAAAGGCATTCCGGAGACAGACCTTTCCAATGTGAAACTTGCCAAAAAACCTTCTATCGAAAGTCTGATATGGTTTTCCATATGAACAgccattcaaaagaaaaacCGTTTCAATGTGAATTATGTGAAAAGTGCTTTACGAATAAGTCTTATTTGAGAGTTCATCTGGGAGTACATGCTACTGAAAAACCTTTTCGGTGTGAAATATGTTCAAAGTTAGTTTCTTCAGGCAGCAGTTTGAGATACCATATGAAAACACACAGAGAAACAAAACCGTTGTTCACATGTGAAGTATGTTCaaaatctttttttgtgaaaggTACCCTAAACATGCACATGAGATTGCATTCTGGAGAAAATTTGGCAGAATGCGAGGTATGCTTGAAGATATTCACTCAGAAATCAGAGTTGAAAAGTCATATGAGAGTGCACACAGGTGAAAAGCCTTTTCAGTGTGAAGTTTGTTCAAAAAGTTTCGGCCTTAAAGCCAACTTGAATGTGCATTTGAGGACACACTCTGAagaaaaaccattcaaatgtGAGGTGTGTTCGAGAGGGTTTTGTCAAAAATCCTGGCTGAGAAATCACATGAGAATACATTCTGGTGAGAGACCCTTTTCATGCGAAATTTGTGGAAAGACCTATGCACAGAAATCATACCTTAGATCTCATATACGGATGCATGCACATAGAAGCTCAACTACTGAGGACTTGATAAAAAAGGAAGTTTTAGAAACAGAGTGA
Protein Sequence: MNPSTKLPLSLLDFPDVCRVCLCPEDLESFEEENMMEKLFLKITDIVVEPITILPRKICKECLNTLIDISVFIDISKLNDATLKKGLMNREDIENNSNESKKTLPFHSPSTCRSCLENCGLNSVEGNPYLCSLFQQITDIAMNSDIPLLNNICSKCLEKLEQISAFIDLSRRNNATLHQAFINKHVKHENTENGSEVKEYVEICSGDTEAETASVPFEEVKLECFAEEKYFTFEEFTVPTDQIKSETFVKEELVSDGIQMKIELNSKNEWLNIETGKLTCDECNKDYPEPPSSEKDYFGEYPTQCNRCGKGILKKQQTKDDAAQALKLKKKHLSKKRKPPFQCEICSKTVMLYSSLRNHMKRHSGDRPFQCETCQKTFYRKSDMVFHMNSHSKEKPFQCELCEKCFTNKSYLRVHLGVHATEKPFRCEICSKLVSSGSSLRYHMKTHRETKPLFTCEVCSKSFFVKGTLNMHMRLHSGENLAECEVCLKIFTQKSELKSHMRVHTGEKPFQCEVCSKSFGLKANLNVHLRTHSEEKPFKCEVCSRGFCQKSWLRNHMRIHSGERPFSCEICGKTYAQKSYLRSHIRMHAHRSSTTEDLIKKEVLETE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00328521;
90% Identity: -
80% Identity: -