Came001203.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- Hivep3
- Assembly
- GCA_958502065.1
- Location
- OY293410.1:18994573-18996229[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6e-05 0.01 18.2 1.1 1 23 107 130 107 130 0.96 2 11 0.0049 0.84 12.1 0.3 2 21 142 160 141 161 0.94 3 11 6.2e-05 0.011 18.1 3.3 3 23 187 208 185 208 0.94 4 11 2.1e-05 0.0036 19.6 1.1 1 23 214 236 214 236 0.98 5 11 0.00018 0.03 16.7 1.1 3 23 244 264 243 264 0.97 6 11 1e-05 0.0018 20.5 1.2 1 20 270 289 270 290 0.96 7 11 9.1e-06 0.0016 20.7 0.4 1 23 301 323 301 323 0.98 8 11 0.00035 0.06 15.7 5.0 1 23 329 351 329 351 0.98 9 11 0.00018 0.031 16.7 1.0 1 23 357 380 357 380 0.97 10 11 7.5e-05 0.013 17.8 0.6 1 23 394 416 394 416 0.98 11 11 2.4e-05 0.0041 19.4 3.6 1 23 422 445 422 445 0.97
Sequence Information
- Coding Sequence
- atgaaaaatatttgtttaatttgtCTGAAAAGTGAAATTGGTATAGTTGAGATTATTGAAACTAGTTCaaataatgaagatattttgGACAAGTTGAAAAAGTGCGTGCCAGAAGTGGAATGGATTCCAATTATCAGGATATGTGAAGACTGTAAGCAGAATTTGGAAAGAGCATACAAGTTCAAAACACTATGTATCAATTCTTACTATTCCTGGAAGACCATACCTTTTTTCTGTGATAAAGAAGCTATCTCAGATGTTGAGAATCCAataatagatgaaaatggaaacTCATCTGAAGAAGAAACTGAATATAGTTTCGAATGTTTTGATTGCAATAAGATTTTCGAAACAAAAGCTCTTTTGGAGCAGCATTCAAAAAGCAAACACAAAACCAAAGATCCATTggcaaacaaacaaaaaccttgTGAAGATTGTGGGAAACTTTATAGtgcaaaaaatatgaagaggCACATGAAAAATTGTATCAATAAAAATGCAAACAAAGATATCTATGAGTTTGAGAAAGTTATCTCAGTGCAGCTGGAATCAACTTGTTGCACACTTTGTGGAACAATATTCACAAATAAATATCTAATGAGACGACATATGAAGAATGTCCATGCCACTGAAAAGAAATTCAAATGTGAACTATGTGAGAGAACATTTACGTCAGCAGTCTATCTAAGTGCCCATAAAAGgTATCATTCTGGTGATAGACCCAACATATGCTCGTTTTGTGGAAAAGGGTTCATAACTACTAGTGATCTTTATCATCACGAGAAAATTCATGTGAATAAAAGAGCTTACAGATGTGAAAAATGTCCCAAGGCTTTTAATACTTCTTCTGACCTGCATAAGCACAAGATATGCGTTCATATAGACAGATCACAATGGAAATATGCCTGCAACGTGTGTGATAGAAAGTTTCCCCTAAAAGTTAATCTTGATAGCCATATGAAAACCCACACGggtgaaaaaaatttttcatgtcATTTATGTGATAGGAAATGCATTAGTAAGTCTGTGTTGAGGAGTCATATCCAGACTCATTCCAATATAATTTCGTTCAAGTGTAGTGAATGCACGCAAGCTTACAAATATCAAAAGTCCTTGAATCTGCATTTGGCCAAAGCACACGGTATTGGAAACGTCAAAATTCCTGTGTCTGTGAAAAAGTTTGTGTGTCCTCTTTGTCTGAGGACTTATTCTGCAAATAACAAGTTACAGAAGCATATTCGATCCCATGACGGTGAAAAACCTTTCAAGTGTTCCGAATGTTCAAAATGCTTTGCAGACAAGTCTTATGTcaaaacacatttgaaaaatgcTCATAACATTCCAAAAGATGAAGatttatga
- Protein Sequence
- MKNICLICLKSEIGIVEIIETSSNNEDILDKLKKCVPEVEWIPIIRICEDCKQNLERAYKFKTLCINSYYSWKTIPFFCDKEAISDVENPIIDENGNSSEEETEYSFECFDCNKIFETKALLEQHSKSKHKTKDPLANKQKPCEDCGKLYSAKNMKRHMKNCINKNANKDIYEFEKVISVQLESTCCTLCGTIFTNKYLMRRHMKNVHATEKKFKCELCERTFTSAVYLSAHKRYHSGDRPNICSFCGKGFITTSDLYHHEKIHVNKRAYRCEKCPKAFNTSSDLHKHKICVHIDRSQWKYACNVCDRKFPLKVNLDSHMKTHTGEKNFSCHLCDRKCISKSVLRSHIQTHSNIISFKCSECTQAYKYQKSLNLHLAKAHGIGNVKIPVSVKKFVCPLCLRTYSANNKLQKHIRSHDGEKPFKCSECSKCFADKSYVKTHLKNAHNIPKDEDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00329900;
- 90% Identity
- iTF_00329900;
- 80% Identity
- -