Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293412.1:92039567-92046478[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.034 5.9 9.5 1.3 1 19 109 127 109 131 0.80

2 16 1.8e-05 0.0032 19.8 3.1 1 23 137 160 137 160 0.98

3 16 0.00097 0.17 14.4 3.5 1 23 172 195 172 196 0.96

4 16 0.00018 0.032 16.6 0.6 3 23 204 224 202 224 0.97

5 16 1.2e-05 0.002 20.4 2.6 1 23 230 252 230 252 0.98

6 16 4.9e-06 0.00084 21.6 0.4 1 23 258 280 258 280 0.98

7 16 0.0012 0.2 14.1 0.1 2 21 287 306 287 307 0.95

8 16 2.7 4.7e+02 3.5 0.3 2 23 389 410 388 410 0.82

9 16 0.11 19 7.9 5.7 1 23 416 438 416 438 0.99

10 16 0.01 1.7 11.2 2.7 1 23 444 466 444 466 0.94

11 16 6.2e-05 0.011 18.1 4.9 1 23 472 495 472 495 0.98

12 16 0.019 3.2 10.3 1.2 1 23 507 530 507 530 0.91

13 16 0.00046 0.079 15.4 0.7 3 23 541 561 539 561 0.97

14 16 4.3e-07 7.4e-05 24.9 3.6 1 23 567 589 567 589 0.98

15 16 1.8e-06 0.00031 22.9 0.4 1 23 595 617 595 617 0.99

16 16 0.075 13 8.4 0.1 2 21 625 644 624 645 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.034	5.9	9.5	1.3	1	19	109	127	109	131	0.80
2	16	1.8e-05	0.0032	19.8	3.1	1	23	137	160	137	160	0.98
3	16	0.00097	0.17	14.4	3.5	1	23	172	195	172	196	0.96
4	16	0.00018	0.032	16.6	0.6	3	23	204	224	202	224	0.97
5	16	1.2e-05	0.002	20.4	2.6	1	23	230	252	230	252	0.98
6	16	4.9e-06	0.00084	21.6	0.4	1	23	258	280	258	280	0.98
7	16	0.0012	0.2	14.1	0.1	2	21	287	306	287	307	0.95
8	16	2.7	4.7e+02	3.5	0.3	2	23	389	410	388	410	0.82
9	16	0.11	19	7.9	5.7	1	23	416	438	416	438	0.99
10	16	0.01	1.7	11.2	2.7	1	23	444	466	444	466	0.94
11	16	6.2e-05	0.011	18.1	4.9	1	23	472	495	472	495	0.98
12	16	0.019	3.2	10.3	1.2	1	23	507	530	507	530	0.91
13	16	0.00046	0.079	15.4	0.7	3	23	541	561	539	561	0.97
14	16	4.3e-07	7.4e-05	24.9	3.6	1	23	567	589	567	589	0.98
15	16	1.8e-06	0.00031	22.9	0.4	1	23	595	617	595	617	0.99
16	16	0.075	13	8.4	0.1	2	21	625	644	624	645	0.91

Sequence Information

Coding Sequence: ATGAAAAAGCCGAAACGTGGCAGAAAAAAGAAACTTCGCGTTGCCGAAGGCGACGAACCGGAAAAGAGAAAGAAACCGAAAGCACGGCGCAAAAGCAGCAACCCGAAGAGAATCATGGTGAACCATCCACCGCCAATAAAACTAGAGGAGCCAATACATTGCGATAACTGTTCCGACTCCTACTACAACCACGTCGATTTCGCCATCCATTCCATCAAGCACAGCGAGGACGGAAAATTCACTTGTCACATATGCAGTAACTATAGAAACGCCAAGAAGTACAGTATAGAGATGCACGTGAGGGCGCACGAAGGTTCCACGAAGTTTAAGTGCGAGATTTGCAATAAAGCGTTCACCATCAGCACCTACGCGCTAGAGCACAAGTTCTTTCATTCCGGCGAAAAGCCTTTTCAGTGCGAAATCTGCGGGAAGCACTTCATGTTTTCCAGACAGCTGGCTTCGCACAGACGAACTTCACACTACGAAATCCTGACGGGGAGTCCTTTGGTGAAATACGATTGCGACATTTGTAAGAAACATTATGAATCAGCTTTCGGGCTCAGGCGACACAAGATGACCATCCATCATAACGTCGATTTGTCCGTCATCTGCGAAGTTTGTGGAAAGACGATTTCCACCAAGGAAAAGCTCAAGTTTCACATGCGCACTCATACCGGCGATAAACCGTATCCTTGTGAGGTGTGCGGCAAATGCTTCGCCAAGAAGCACCAGATGATAGAGCACACGAGGGTCCATACTGGGGAGAAACCCTATATTTGCCCGCACTGCGGCAGGGGATTTTCTCAAAGGACACCTCTGGTGCTGCATGTCCGCACTCATACTGGTGAGAGGCCGAATGTGTGCAGGATTTGTGGAAATGGGTTCATCTCTAAGACGTCTTTAGAGGCTCACATGAAGAATTGTTTTATACCGTTTGCTACAACCATCATAACTGAAGGAGGTGACCAAAAATCGAAGCAGAAAACAACGAAATCCAAAGTAAAACCCGCCAAGGGAAAAAAAAGATCAGTCAGAACCAAATCGAATGATGACACCGAAGGCTCCGTAAAAGCGAAGAAAGAGAAAAAATCCCGGCGGAAGAGTAACAGTCCGAAGAAAATCGTCCTGTCCCATCCTCCCCCAATGGAACTAGAGGAACCCATCCAATGTGACGTTTGTAGCTCGTCCTACACCAATAACGTCGATTTCGCTTTCCATTCCTTGAGCCACAGCGACGACGGAAAATACTCTTGCCACATGTGCAACTACCGCAACAGTTCCAAGTACCACGTCGAGATGCACGTGAGAACGCACGAAGGTACCACCAAGCACAAATGCGAGATTTGCGACAAGGCCTTCACTATAAGCACCCACGCGATCGAGCACAAGAACTTCCACACCGGCGAAAAGCCGTTCCAGTGCGAAATATGCGGGAAACACTTCATGTTTTCCTGGCACCTGTCCTCGCACCGCAGAACCTCTCACTACGAAATCCTCACCGGGAAACCGCTGGTCAAGTTCGACTGCGCGGCTTGTAACAAGCATTACGAGTCTGCCAGCGGCTTGAGGAGGCACAACATCAAGAAGCACAAGTTCAACGAGATAGACTTGTCCGTGATCTGTGAGATCTGCGGGAAGAGGCTCTCCAGCAAGGAAAAACTCAAGTTCCACTTGCGCACGCACACCGGATACAAGCCGCACTCCTGTCATGTCTGTCCGAAGAGTTTTTCCAAAAAGGACCAGCTCATCGAGCATATTCGTACCCACACGGGCGAGAAGCCGTACGTTTGCAAAATTTGCGGGAAGGGTTTCGCGCAGAGGACTCCCCTCAAAACTCACGAACGCACGCATAACGTCAACAGGTCGGGCAGTACTTGCACCGTATGCGGATTGGTTTTCAGATTGACGGACGAATTCGACAATCACGTTAAAGGGTGCTTGGCTGCCCAGTTGCAATTTCCTTATATCCTCAACTATAAAACCGAAACTCCGTGA
Protein Sequence: MKKPKRGRKKKLRVAEGDEPEKRKKPKARRKSSNPKRIMVNHPPPIKLEEPIHCDNCSDSYYNHVDFAIHSIKHSEDGKFTCHICSNYRNAKKYSIEMHVRAHEGSTKFKCEICNKAFTISTYALEHKFFHSGEKPFQCEICGKHFMFSRQLASHRRTSHYEILTGSPLVKYDCDICKKHYESAFGLRRHKMTIHHNVDLSVICEVCGKTISTKEKLKFHMRTHTGDKPYPCEVCGKCFAKKHQMIEHTRVHTGEKPYICPHCGRGFSQRTPLVLHVRTHTGERPNVCRICGNGFISKTSLEAHMKNCFIPFATTIITEGGDQKSKQKTTKSKVKPAKGKKRSVRTKSNDDTEGSVKAKKEKKSRRKSNSPKKIVLSHPPPMELEEPIQCDVCSSSYTNNVDFAFHSLSHSDDGKYSCHMCNYRNSSKYHVEMHVRTHEGTTKHKCEICDKAFTISTHAIEHKNFHTGEKPFQCEICGKHFMFSWHLSSHRRTSHYEILTGKPLVKFDCAACNKHYESASGLRRHNIKKHKFNEIDLSVICEICGKRLSSKEKLKFHLRTHTGYKPHSCHVCPKSFSKKDQLIEHIRTHTGEKPYVCKICGKGFAQRTPLKTHERTHNVNRSGSTCTVCGLVFRLTDEFDNHVKGCLAAQLQFPYILNYKTETP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -