Came048478.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- Zbtb41
- Assembly
- GCA_958502065.1
- Location
- OY293418.1:1280993-1289210[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00097 0.17 14.4 1.2 1 23 154 176 154 176 0.98 2 13 0.099 17 8.0 0.0 2 23 183 204 182 204 0.96 3 13 0.05 8.7 8.9 0.2 2 23 212 233 211 233 0.92 4 13 0.00014 0.023 17.0 1.1 1 23 253 275 253 275 0.97 5 13 9e-05 0.015 17.6 0.3 1 23 280 302 280 302 0.99 6 13 2.9e-06 0.00051 22.3 0.3 1 23 308 331 308 331 0.98 7 13 7.6e-06 0.0013 21.0 1.0 1 23 337 359 337 359 0.98 8 13 0.00016 0.027 16.8 1.7 1 23 365 387 365 387 0.97 9 13 7e-05 0.012 17.9 0.2 1 23 393 415 393 415 0.97 10 13 6.7e-05 0.012 18.0 0.6 1 23 437 459 437 459 0.96 11 13 0.2 34 7.1 3.4 1 23 469 491 469 491 0.90 12 13 2e-05 0.0034 19.7 0.4 3 23 498 518 497 518 0.98 13 13 8.9e-07 0.00015 23.9 3.5 1 23 523 545 523 545 0.98
Sequence Information
- Coding Sequence
- ATGAATGAAACTATGAAAGGTTTAGGCGATCCGATAGAGGAGTTGGAAAATGTAAACGTCCCAGATATTAAACAGGAAGTTGTAAAAGAAGAGATTTGTGAGGAAGAGCTTCCAGATCTCCCGAATTATGTAACTATCAAAGATGAAGTAGTAATAGACAAATTAGATATCGTCCCGAATCAAGACGTTCACAAAACTCACTCAGGACAACTTGCAAAGTCCGAATGCTCTGATGGAGACAACGAAGAAACAAAACCGCTAAAAATCAAAACCGAATGTGAGTTTGAAGAGTTCGATCAACCCGATCAAATACCAGTTGAGGATATCGACTCCATTCTTTTTGAAGGAACCAAGACAAAAGTTAAAAGTGAGTTTGGCAGTACTGAGAATTCTAATGAGCCAACTgatggaatttttgaaaaagattcCACTTCACAACTCTCTAGCATAAAGACACTGTTCAAATGTGAAGTTTGTGACAAAGGTTTTGTCAAAGAGGCCGTCAAGAATCGGCACATGTGCGTGCATTTCGGGAAAGGTCCCGTCCCCTGCACGGTGTGCGGAGAGGGAATCGACGATAGAAAATCGTACATCCAACACTACGGCACCCATCTGGAAGATCTGTCCGGAATCTACTGCGCGGTTTGCTACAGAAAATTCTCCTCTCAAGCGGACCTCGACGGCCACAGCACGTCCCACCGAAACCTAACCTCGAAGGTGGAACGGGACGACGTGCCGCGCGCGAATCAGAAACACTATCAGTGCCACTACTGCCCGATGAACTTCCCCAGCCGATCCGACTTCCTCGGCCACATCAGCCTGCACGGCAGACCGCTGTTCCAGTGTCCGGTGTGCCTGAAGAACTTCGGCAAGACCATCGAGCTGGAGAAGCACCAGAGGATCCACACCGGCTCGAAGCCCTTCTCCTGCGACATCTGCTCCAAGGCATTCGTGCAGCGCGGTTCGCTGAACGTCCACCGGAAAACTGCGCATTCCGACGAGAAGCCCTTCCGGTGCAGTCTGTGCCCCGTGAACTTCGCCTACAGCTCCAGCCTGAAGAGGCACCTGCGGAACCACCGCGGCGAGAGGCCGTTCAAGTGCAAGGAGTGCTTCAAGAGCTTCAAGCTGCGGTATTTGTTGGAGGAACACGTGATTAACCACACGGGCGAGCCGCCCTTCGCGTGCGCGGAATGCCCCAAGAAGTTCGGGCGGCTGAGCGCGCTGACGGAGCATTCCCGCAGCCACTATTCCGGCCTCGGCGACAAGAGTTTCGCCGTGAGCGAAAGCCCGCACGACGACGACGAGGCGTTCAAATGCCACGCCTGCGGGAAGACTTTCGGGAGCGAAGACGGCTTGAGAAACCACCGAGCCGCCCACGACGACGCGCGCGTCATCGAGCGCCCGTTCGCGTGCCACCTGTGCTCCAGGAGGTTCACCACGAAGAACAGGAGGGACACGCACGCGGAGACGCACCCGACGAAGCCGATTCTGTGCGAGGTGTGCGACAGACAGTATGCGAACAGGGAGACTCTGAGGAGGCACATGCGGGCGCATTCCGATGAGCGTTTCGCGTGCGAGGTTTGTCACAAAATTTTCCGCAGCACTAGGAACCTCAAGCAGCATATGCGGACTCACTCCGTGATTGATGAGCGGGCGGTAGTGGATGAGGGGGCGGAGTAA
- Protein Sequence
- MNETMKGLGDPIEELENVNVPDIKQEVVKEEICEEELPDLPNYVTIKDEVVIDKLDIVPNQDVHKTHSGQLAKSECSDGDNEETKPLKIKTECEFEEFDQPDQIPVEDIDSILFEGTKTKVKSEFGSTENSNEPTDGIFEKDSTSQLSSIKTLFKCEVCDKGFVKEAVKNRHMCVHFGKGPVPCTVCGEGIDDRKSYIQHYGTHLEDLSGIYCAVCYRKFSSQADLDGHSTSHRNLTSKVERDDVPRANQKHYQCHYCPMNFPSRSDFLGHISLHGRPLFQCPVCLKNFGKTIELEKHQRIHTGSKPFSCDICSKAFVQRGSLNVHRKTAHSDEKPFRCSLCPVNFAYSSSLKRHLRNHRGERPFKCKECFKSFKLRYLLEEHVINHTGEPPFACAECPKKFGRLSALTEHSRSHYSGLGDKSFAVSESPHDDDEAFKCHACGKTFGSEDGLRNHRAAHDDARVIERPFACHLCSRRFTTKNRRDTHAETHPTKPILCEVCDRQYANRETLRRHMRAHSDERFACEVCHKIFRSTRNLKQHMRTHSVIDERAVVDEGAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -