Came022096.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293413.1:1054325-1071179[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.93 1.6e+02 5.0 5.3 1 23 285 307 285 307 0.94 2 12 5.1e-06 0.00088 21.5 1.7 2 23 374 396 373 396 0.97 3 12 6.6e-06 0.0011 21.2 1.9 1 23 402 424 402 424 0.98 4 12 0.00014 0.024 17.0 0.2 1 23 436 459 436 459 0.97 5 12 2.4e-05 0.0041 19.4 3.5 1 23 465 487 465 487 0.98 6 12 7.5e-05 0.013 17.8 0.2 1 23 493 515 493 515 0.95 7 12 0.0011 0.18 14.2 4.4 1 23 521 543 521 543 0.97 8 12 6.9e-08 1.2e-05 27.4 0.7 1 23 549 571 549 571 0.98 9 12 2.9e-06 0.00051 22.3 2.7 1 23 577 599 577 599 0.98 10 12 0.00089 0.15 14.5 5.2 2 23 606 627 605 627 0.97 11 12 2.9e-06 0.0005 22.3 0.1 1 23 633 655 633 655 0.98 12 12 1.1e-06 0.00019 23.6 3.1 1 23 661 683 661 683 0.98
Sequence Information
- Coding Sequence
- ATGGATGTAAAATTATGTGATTCGAATTACTGTAGGCTATGCGccgaagaaaacaaaaatggaaCACATTTATTCACAGAAGATGAAAATACAAACAGTTTAGTACTACTGGTCAATAAGTATTTACCGGTGACGGTCGAAAACGACTCGAAGTTTCCGAAATACATCTGTCCAGGATGTCACATACAACTGGAGGCGACAAAACTCTTCATGGATCTCATAGTAGAGGGCCAGTCAAAATTGAGGACCATGTACCATGCCCAACAAGAAAAGCTCCAGAAAGAAGCTAAACAAAAACAGCAACTAGAAGCTGCGTTGCATACTGTGAATCCGAATAGCACAGTTGAAACTTATTCAATACAAACTGATGAGACTGGAGACAAGTTCTTAATTCAAAtATATACAGATGGGCCTTTATTTCCTCCCGAACATGAATTATCTCTGAAAGCTGAAGGTCTGGAGAAGCCAAGGCGAAGAAGAGGAAGGCCACCAAAGCAACTCACCGATTCGAATAAAATAAAGTCAGAACCAGAGAAGAAAGATGAAGGAGAGCCTGAACAATCTCAAGGAGAGGATGACATCGGGGAGGATGGGAGGAAGCGAAGGAAAATTAAGGCTCCTTCTAGATTTGCAGGCGAAGTCCAGGGCAAAGAGTTGGAGAAAATCCTCAAAGAAGAGGGGGTGTTAGATGATGAAACTATCCAAGGTGATAACGGTTTCAACCCATCGGTGGACGACACTGTTATAGGAAGAACTGAAAGTGGCACTGGCGAAGATTTGGGCGAACCTATTTTCATACATCGTCCGAAAATCAGATCCAAATACGGTTATATGAAAAAGGGGAAGAAAAGATTCAAATGTGATATTTGTACAAAAGAATTCTTTCATCCGGGACGCTGTGAACTTCATAGGAAATCTCATAACATTTACTACGTATGTCGATTCGGGTGTGAATTTCAGAATAAGGATAGATCCGTGGTTGGGAAGCATCAGCTTGAAACTGGGCATACTGGAATATCAGTAATTGACAAGCAGGATTCTATTGGCGGCGTTCTTCAACTACCGGAAGGCGCTGTAAACGCCGAAAACCCCCCTCAAAAGCAACCGAATCCGCAACAAGAATGCCCCGAATGCCACAAAACGTTCTCGAACAAACAGAACCTCGACGTCCACAGTCGCACAGTGCACTCCAACGAAAAACCGTTCGAGTGCACGAAGTGCGACAAACAGTTCGCCTACTCCAACAGTCTGAAACTGCACATGATGAAGCACGATAGAGAAGACGCGGTCAATCCACCCATCGACTACCCTTGCGACGTGTGCGGCAAGGTTCTGCAACACCCGAGCAGCTTGCTGTATCACCAGGAGACGGAACACAGCAACGGCAGGCGTTTCGTCTGCACGAAATGCAACAGAGGCTTCAAGCATCGCCAGCTGCTCCAGAGGCACCAGCTGGTGCACTCGGACGAGAGGCCGTTCGCCTGCGACAAGTGCGACTCGACGTTCAAAACGCAGGCGAACCTGATGAACCACGAGGCGGTGCATACGGGCGAAAAGAAGTTCTGCTGCGGCCAGTGCGGCCAAAAGTTCGCGCACCGCACCTCGCTCAGCCTGCACCAGCGCTGGCACGAGGGCCACAAGCCGTACGTGTGCGAGTATTGCGACAAGTCGTTCTCGCAAAAGGGCAACCTGTCGGAGCACACGAGGATCCACACCGGCGAGAAGCCGTTCTACTGCGACCAGTGCGGCAAGTTCTTCACGACCTCGTCGCAGTTTAATATTCACGTCAAGCGACATAACGGCGAAAAACCGTGGACGTGCGAGCACTGCTCGAAGAGCTTCCTCCACAAAGACAACTTCAAGGCGCACGTGCGACGCCACCTCGACCAGCGTCCATTCGTGTGTCCGCAATGCCCGCGCGCCTTCACCGAGCCGTGGGCGCTGAAACGTCACGAGCGCACGCACACGGGCGAACGGCCGTACAGTTGCGACCATTGCGACAAGACGTTCGCCGACAGATCCAACAAGAACAAGCACATGCGCGCGCACAAGTTCGCCGACAACGTCAAGTTCGTGAGCAAGGCGGCCGTGAACGGAGACGGCGCGCCGTGGTTCCCGAACGGCGACGACGCCGCCAGAAGGACGTTGCATGTGACGCAGCTGACGCAGCTGGTCGACCGCCAGGGGAATCCCATCAGCATCAGGACGGAGTCCGGGGAGACGGTACCCGTGTTAACGACGGGGGGCGAGGAGGAGAGCTTCCAGGGATTGATGCCGGACGGTACGTTGGTACCAATCGAGATTGAGAGCGTGGAGGAAAAGGAAGACAGTGAGgGTGTTGAACTCGGCTTGTTGGACGGATCGAGTCAGGAACCGGTCATACTGAGTTCCGACAGTATATTACAGGTGAACGGCGGTACTTTGGATCCTAATTTACAGTTGTTGACTGATGATGGCAGGCAAGAAATGTGCCTGGTTACCTATGCGATAGATGAAAACGGTGAAGTTACCCAGGAGCTGGCGGTGGATCAACTACTTATTCAGAATtga
- Protein Sequence
- MDVKLCDSNYCRLCAEENKNGTHLFTEDENTNSLVLLVNKYLPVTVENDSKFPKYICPGCHIQLEATKLFMDLIVEGQSKLRTMYHAQQEKLQKEAKQKQQLEAALHTVNPNSTVETYSIQTDETGDKFLIQIYTDGPLFPPEHELSLKAEGLEKPRRRRGRPPKQLTDSNKIKSEPEKKDEGEPEQSQGEDDIGEDGRKRRKIKAPSRFAGEVQGKELEKILKEEGVLDDETIQGDNGFNPSVDDTVIGRTESGTGEDLGEPIFIHRPKIRSKYGYMKKGKKRFKCDICTKEFFHPGRCELHRKSHNIYYVCRFGCEFQNKDRSVVGKHQLETGHTGISVIDKQDSIGGVLQLPEGAVNAENPPQKQPNPQQECPECHKTFSNKQNLDVHSRTVHSNEKPFECTKCDKQFAYSNSLKLHMMKHDREDAVNPPIDYPCDVCGKVLQHPSSLLYHQETEHSNGRRFVCTKCNRGFKHRQLLQRHQLVHSDERPFACDKCDSTFKTQANLMNHEAVHTGEKKFCCGQCGQKFAHRTSLSLHQRWHEGHKPYVCEYCDKSFSQKGNLSEHTRIHTGEKPFYCDQCGKFFTTSSQFNIHVKRHNGEKPWTCEHCSKSFLHKDNFKAHVRRHLDQRPFVCPQCPRAFTEPWALKRHERTHTGERPYSCDHCDKTFADRSNKNKHMRAHKFADNVKFVSKAAVNGDGAPWFPNGDDAARRTLHVTQLTQLVDRQGNPISIRTESGETVPVLTTGGEEESFQGLMPDGTLVPIEIESVEEKEDSEGVELGLLDGSSQEPVILSSDSILQVNGGTLDPNLQLLTDDGRQEMCLVTYAIDENGEVTQELAVDQLLIQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00329899;
- 90% Identity
- -
- 80% Identity
- -