Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293418.1:22147210-22148847[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.4e-06 0.00025 23.2 2.1 2 23 143 164 142 164 0.96

2 11 1.5e-06 0.00027 23.2 2.5 1 23 170 192 170 192 0.99

3 11 3.6e-06 0.00062 22.0 0.9 1 23 198 220 198 221 0.96

4 11 9.8e-06 0.0017 20.6 1.5 3 23 284 304 282 304 0.97

5 11 3.6e-06 0.00063 22.0 1.6 1 23 310 332 310 332 0.96

6 11 3.4e-06 0.00059 22.1 1.1 1 23 338 360 338 360 0.98

7 11 1.7e-05 0.0029 19.9 5.0 1 23 366 388 366 388 0.95

8 11 0.023 4 10.0 5.7 2 23 403 424 402 424 0.96

9 11 3.2e-05 0.0055 19.0 1.4 1 23 430 452 430 452 0.98

10 11 1.4e-06 0.00024 23.3 0.9 1 23 458 480 458 480 0.97

11 11 1.7e-06 0.00029 23.0 5.8 1 23 486 508 486 508 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.4e-06	0.00025	23.2	2.1	2	23	143	164	142	164	0.96
2	11	1.5e-06	0.00027	23.2	2.5	1	23	170	192	170	192	0.99
3	11	3.6e-06	0.00062	22.0	0.9	1	23	198	220	198	221	0.96
4	11	9.8e-06	0.0017	20.6	1.5	3	23	284	304	282	304	0.97
5	11	3.6e-06	0.00063	22.0	1.6	1	23	310	332	310	332	0.96
6	11	3.4e-06	0.00059	22.1	1.1	1	23	338	360	338	360	0.98
7	11	1.7e-05	0.0029	19.9	5.0	1	23	366	388	366	388	0.95
8	11	0.023	4	10.0	5.7	2	23	403	424	402	424	0.96
9	11	3.2e-05	0.0055	19.0	1.4	1	23	430	452	430	452	0.98
10	11	1.4e-06	0.00024	23.3	0.9	1	23	458	480	458	480	0.97
11	11	1.7e-06	0.00029	23.0	5.8	1	23	486	508	486	508	0.99

Sequence Information

Coding Sequence: ATGGATACTTATAATCCTTCAAATCTTTGTCGAGCGTGTTGCTCTGTTGGTGATCTACATTCCCTACTCGATAACTCCGATTTATTCATAACTTTTGAACATATAACTTGCCTACAGaTTAGAGAATCCGTTGATTTGCCACAGAACATTTGTACGAAGTGTACTGTTAAGTTGGAAGACATTTCTCAATTCATTAGCACATGCAAAGCTAGTGATGCTTATCTCCGACAATTGGTGGAAAAAGACGATAACAGTGATATATGTGATAACTTTGTGGAAGATGATTTTGTTGAAGAACATAATAGCAAGGATACAACTGAAAGCACACCACTCTTGATTTCCAAACCAGACGTCGAGTCACTTGTTTCATCTACAACAAAGGAAAATAAGccaaaaagtaaaagaaaaaaaCGCCCAGAAGATTGTTCTTGTGACACATGTGGTAAACAGTTTACTAGATTGGGTGGATTACAACGTCACATGAAAATTCATTTGGGTATTAGGCCTTTCAAATGCAAATCTTGTAATAAAACATTTGCTCAAAAAGCAACTTTAGAAAGACATTATTTGACACATACAGGTGAAAAGCCATTCGAATGCAACTTATGCGGCAAAGTGGGAAGAAGAAAAGATCAGCTcattgaacatattcaaaaacatCACTCAAATGTTACAGATTTTGATTTAGTTATCACCGAACATGATAGAGCAAATTCCAGTAGCCTTGGAGTTGAAACCGAGATAAAAGAAATATCTATAGAGGAGAGCAAAGTTCTTGAACCTGAAGAAAATACTTCTGACAAGAAAGAGGTGAAATTTAAAACCAAAAAACGCATAGAAATCTGTTTGTGCAACCTATGTGGTAAAGTGTTTCAAAGGAGAGGTTATCTCAAAAATCATATGGCCATACATGCAACAGTTAAGCCATTTATTTGCAATATTTGTGGTAGAGGCTTTACACAACGACATTCTCTGACACGTCACAATTTGGTTCATACAAAAGAGAGACCCTTTCAGTGTAGTTTGTGTGGAAAGACATTTACTCGCAAGGAAATCTTGACTGAGCACATCAAAAGCCATGATGGAGCATCACCGTACCTATGTTTCCACTGTGGGAAATACTTTTCCAACAAAGATTACTTGAAGAAGCACCTTAATTACCATGTGGCTGGAAAAAGAACCAAAAAGAGTTCtgataaaaaatgtgtttgttcACATTGTGGTAAACAGCTCCACTCTATTTCGTACTTGAAAACTCATCTTTTGATGCACAGCGGTGAAAAGCCTTATGAATGTAATATTTGTGGGAACAGATTCACCATCCAAAGGTCTTTGAATCACCATTTGAATATACATAAAGGTATCAAGCCTTATCAGTGTACCCAGTGTGAGAAGGCCTTCAGAACATCTGGATCTCTGAGGAAGCATGTGCTATTGCATACTGGTGAAAGACCCTATAAATGTACTAGTTGTGACAAGGGGTTCATCAGGCGGAGTCATTTGAAGAGGCATTTCAGAACACACTAG
Protein Sequence: MDTYNPSNLCRACCSVGDLHSLLDNSDLFITFEHITCLQIRESVDLPQNICTKCTVKLEDISQFISTCKASDAYLRQLVEKDDNSDICDNFVEDDFVEEHNSKDTTESTPLLISKPDVESLVSSTTKENKPKSKRKKRPEDCSCDTCGKQFTRLGGLQRHMKIHLGIRPFKCKSCNKTFAQKATLERHYLTHTGEKPFECNLCGKVGRRKDQLIEHIQKHHSNVTDFDLVITEHDRANSSSLGVETEIKEISIEESKVLEPEENTSDKKEVKFKTKKRIEICLCNLCGKVFQRRGYLKNHMAIHATVKPFICNICGRGFTQRHSLTRHNLVHTKERPFQCSLCGKTFTRKEILTEHIKSHDGASPYLCFHCGKYFSNKDYLKKHLNYHVAGKRTKKSSDKKCVCSHCGKQLHSISYLKTHLLMHSGEKPYECNICGNRFTIQRSLNHHLNIHKGIKPYQCTQCEKAFRTSGSLRKHVLLHTGERPYKCTSCDKGFIRRSHLKRHFRTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00329874;
90% Identity: -
80% Identity: -