Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293418.1:1447444-1452976[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00014 0.023 17.0 0.7 1 23 118 140 118 140 0.98

2 17 1.4e-05 0.0025 20.1 10.7 1 23 146 168 146 168 0.99

3 17 0.00067 0.12 14.8 2.7 1 23 174 197 174 197 0.95

4 17 0.22 38 6.9 3.2 1 23 207 230 207 231 0.94

5 17 0.00043 0.074 15.5 7.4 1 23 235 257 235 257 0.97

6 17 0.00065 0.11 14.9 2.8 1 23 272 294 272 294 0.92

7 17 0.00011 0.019 17.3 1.3 1 23 298 320 298 320 0.99

8 17 0.0015 0.26 13.7 9.6 1 23 326 348 326 348 0.98

9 17 0.029 5.1 9.7 0.2 3 23 356 376 355 376 0.98

10 17 0.0026 0.45 13.0 0.3 3 23 383 403 381 403 0.92

11 17 1.5e-05 0.0026 20.0 0.9 1 23 408 430 408 430 0.98

12 17 3.5e-07 6.1e-05 25.2 6.1 1 23 479 501 479 501 0.98

13 17 0.07 12 8.5 0.4 2 23 508 527 507 527 0.94

14 17 0.088 15 8.2 2.3 1 23 533 555 533 555 0.97

15 17 3.8e-07 6.5e-05 25.1 0.7 1 23 569 591 569 591 0.98

16 17 0.0031 0.53 12.8 0.1 1 23 597 619 597 619 0.98

17 17 1.7e-05 0.0029 19.9 5.5 1 23 625 648 625 648 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00014	0.023	17.0	0.7	1	23	118	140	118	140	0.98
2	17	1.4e-05	0.0025	20.1	10.7	1	23	146	168	146	168	0.99
3	17	0.00067	0.12	14.8	2.7	1	23	174	197	174	197	0.95
4	17	0.22	38	6.9	3.2	1	23	207	230	207	231	0.94
5	17	0.00043	0.074	15.5	7.4	1	23	235	257	235	257	0.97
6	17	0.00065	0.11	14.9	2.8	1	23	272	294	272	294	0.92
7	17	0.00011	0.019	17.3	1.3	1	23	298	320	298	320	0.99
8	17	0.0015	0.26	13.7	9.6	1	23	326	348	326	348	0.98
9	17	0.029	5.1	9.7	0.2	3	23	356	376	355	376	0.98
10	17	0.0026	0.45	13.0	0.3	3	23	383	403	381	403	0.92
11	17	1.5e-05	0.0026	20.0	0.9	1	23	408	430	408	430	0.98
12	17	3.5e-07	6.1e-05	25.2	6.1	1	23	479	501	479	501	0.98
13	17	0.07	12	8.5	0.4	2	23	508	527	507	527	0.94
14	17	0.088	15	8.2	2.3	1	23	533	555	533	555	0.97
15	17	3.8e-07	6.5e-05	25.1	0.7	1	23	569	591	569	591	0.98
16	17	0.0031	0.53	12.8	0.1	1	23	597	619	597	619	0.98
17	17	1.7e-05	0.0029	19.9	5.5	1	23	625	648	625	648	0.95

Sequence Information

Coding Sequence: ATGGATTCTGCAGACGATTCAAGCCCCTTTTTGATAAGTCATATCAAATATGAACCACCTGAGGACTATGTAGAAACAATTATCATTGAGGTTATGAAAGACGACAACATTGTAGACGATATCACTTCTTCACTCAATCCAGAAGAAAACCAACAGATTACATTCAAGGAAGAGGGTATGGTACTAGAGGATAAAGCATGTATCAAAGAAGAATTTGAAGATGACCAGCTTGACGAATTTGGTTTGGTGAAAAATGAAGCAGAATGGGACACTGGAAACAGTGTGGAGGTATTTAAAGAAGATGTAGATTTGTTGAATGTAGAGGATAAACCCAAGGTATCTGATGACAGTTATCCATGTAACATTTGCAGTAAAAGCTTTGCTCGAACTCAAATTTTGATGCGGCATTTGCGTAATCATACTGGTGAACGTCCTTTCAAGTGTCACATCTGCCCGTATAGTTTTTGTCGGCAACACCATTTGAACAGGCACCTCCTGACCCACACAGGTGAGCGACCTTTCAAGTGTGAGACCTGTCTGAGCACTTTTTCTCGAAAGGATCATTTGAACACTCATGTCGATAGGGTTCACCGTACTTCAGGCCAAGTGGAAGAGAAGTTCCAATGTTTCAACTGCAAGGAGAATTTTTTCGAGAAACTCTCCCTCATAAAGCATGTGTTCAGTGTTCACCATCAAGGTTTGTTCCACTGCAATCATTGCCCAAAGAATTTCACATTGaagcaaaattttcaaagacaccTGAAACTCCATGGTCTGGCACAGGTACCGGTAGAACCCGAAGTAAAAGGACCTTTCTTGTGCCATCTTTGTGGAAAAACATTTTCCTTGAAAAAATTCCTAGAAAAACACGAAGAACTACACGAGAAAAACTACCAATGCGAAGTTTGCGGAAAGTGTTTTGGGGCGTCGTGGAGCATTAGAAAGCACCTTCAGAAACACTTGAGAGAGCAGCATTTTCAATGCAAGATTTGCCACAAACGTTTCAAAATTAAGAGATATTTCAACAATCACATGAAACACCATCAGAACCCTGAACATTCCTTGTGCGACATTTGCGGTAAATGGATTCCTACTAAAGATAGTTTCATCAAACACCGCAGAGCTCATTTGAGATACCAGCAGCAATGCATCGTGTGCGGTTTGAAGTATGCCCGTAGGGATCTCTTCGAGAGGCATATGGAACGCCACAAATCGCGCCCTTTCAAATGTTCCGAATGCTCTATGTCTTTCAGCCAGAAAAATGACCTGATCAGCCACGAGAAGATTCACGAGAAAAAAGGAGAATCGGGGGGGATCACAGCGTTGATTTCTGCAGATCCGCCCGATGAACTCTCGCAGATTGAAGCAAAGATCGATCCTCTGATTAAAACTGAACCATCAGTCAAGACTGCGAAGGGGAAATCGAAGCCAGAGCATCGTTGCACTGTTTGCCCCAAAACGTTCTCTTATAACAGCCACTTGCGCAACCACATGCGCTCCCACTCCAGTGAAGCCACGCTCGAGTGCCCGATATGCTTCAAGAAAGTGAAGGCGAAGCTGGAAAGCCACATGAGAGTCCACTCGGACGAGAGGCCTTTCGAGTGCTACATCTGCCATCAACGCTTCCGCTGGAGGGAGGTGATGACGGTCCATCTGAAGACGCACTCGGCGAAATCCCCCCGCGACGTCGACAATCCGCGGCCGTACGCGTGCGCCGAATGCGACAAAACTTTCCGAACGAAGTTTGGGTTGAAGCTGCACATGAGAGTACATACGGGAGATCGGCCGTACGAGTGCTGGGTATGCTTGGCGCGGTTCACGATGAGCGGTTCCTTGAAGGCTCACGAGAAAATACATACCGACGAGCGCCCGTTTTTGTGCCATCTATGCTCCAAGAGTTTTCGAAGGAACACGCATTTAACCGAGCATATAAAGACGGTTCATGCAGAGGGGAAGCTGGTGAAGAAAAGTAAAGATGTCTCTACTGAGAAGGCTGCAAAAGAGAAAGTTGGAATTGCTGAGAAGAGCGTTGTCATCAAGGTGATTCGAAGGAAGAAGCACTAG
Protein Sequence: MDSADDSSPFLISHIKYEPPEDYVETIIIEVMKDDNIVDDITSSLNPEENQQITFKEEGMVLEDKACIKEEFEDDQLDEFGLVKNEAEWDTGNSVEVFKEDVDLLNVEDKPKVSDDSYPCNICSKSFARTQILMRHLRNHTGERPFKCHICPYSFCRQHHLNRHLLTHTGERPFKCETCLSTFSRKDHLNTHVDRVHRTSGQVEEKFQCFNCKENFFEKLSLIKHVFSVHHQGLFHCNHCPKNFTLKQNFQRHLKLHGLAQVPVEPEVKGPFLCHLCGKTFSLKKFLEKHEELHEKNYQCEVCGKCFGASWSIRKHLQKHLREQHFQCKICHKRFKIKRYFNNHMKHHQNPEHSLCDICGKWIPTKDSFIKHRRAHLRYQQQCIVCGLKYARRDLFERHMERHKSRPFKCSECSMSFSQKNDLISHEKIHEKKGESGGITALISADPPDELSQIEAKIDPLIKTEPSVKTAKGKSKPEHRCTVCPKTFSYNSHLRNHMRSHSSEATLECPICFKKVKAKLESHMRVHSDERPFECYICHQRFRWREVMTVHLKTHSAKSPRDVDNPRPYACAECDKTFRTKFGLKLHMRVHTGDRPYECWVCLARFTMSGSLKAHEKIHTDERPFLCHLCSKSFRRNTHLTEHIKTVHAEGKLVKKSKDVSTEKAAKEKVGIAEKSVVIKVIRRKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -