Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293419.1:59771165-59775774[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0098 1.7 11.2 3.1 1 23 305 327 305 327 0.98

2 15 0.0035 0.6 12.6 0.3 3 23 335 355 334 355 0.98

3 15 2.1e-06 0.00036 22.8 7.8 1 23 396 418 396 418 0.98

4 15 0.00031 0.053 15.9 1.6 1 23 424 446 424 446 0.95

5 15 8.7e-06 0.0015 20.8 2.6 2 23 453 474 452 474 0.97

6 15 5.3e-05 0.0092 18.3 3.6 2 23 480 501 480 501 0.98

7 15 4e-06 0.0007 21.8 0.6 2 23 507 528 506 528 0.97

8 15 9.1e-08 1.6e-05 27.0 1.4 1 23 534 556 534 556 0.99

9 15 9.8e-05 0.017 17.5 0.5 2 23 561 582 560 582 0.96

10 15 0.0013 0.23 13.9 0.5 2 23 589 610 588 610 0.97

11 15 7.5e-06 0.0013 21.0 0.4 1 23 616 638 616 638 0.98

12 15 0.00023 0.04 16.3 1.0 2 23 644 665 644 665 0.98

13 15 3.5e-05 0.006 18.9 1.0 2 23 671 692 671 692 0.98

14 15 6.4e-06 0.0011 21.2 3.5 1 23 698 720 698 720 0.99

15 15 0.0018 0.3 13.5 1.7 1 23 726 748 726 748 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0098	1.7	11.2	3.1	1	23	305	327	305	327	0.98
2	15	0.0035	0.6	12.6	0.3	3	23	335	355	334	355	0.98
3	15	2.1e-06	0.00036	22.8	7.8	1	23	396	418	396	418	0.98
4	15	0.00031	0.053	15.9	1.6	1	23	424	446	424	446	0.95
5	15	8.7e-06	0.0015	20.8	2.6	2	23	453	474	452	474	0.97
6	15	5.3e-05	0.0092	18.3	3.6	2	23	480	501	480	501	0.98
7	15	4e-06	0.0007	21.8	0.6	2	23	507	528	506	528	0.97
8	15	9.1e-08	1.6e-05	27.0	1.4	1	23	534	556	534	556	0.99
9	15	9.8e-05	0.017	17.5	0.5	2	23	561	582	560	582	0.96
10	15	0.0013	0.23	13.9	0.5	2	23	589	610	588	610	0.97
11	15	7.5e-06	0.0013	21.0	0.4	1	23	616	638	616	638	0.98
12	15	0.00023	0.04	16.3	1.0	2	23	644	665	644	665	0.98
13	15	3.5e-05	0.006	18.9	1.0	2	23	671	692	671	692	0.98
14	15	6.4e-06	0.0011	21.2	3.5	1	23	698	720	698	720	0.99
15	15	0.0018	0.3	13.5	1.7	1	23	726	748	726	748	0.98

Sequence Information

Coding Sequence: ATGAGTGATGAAGTTATGCCGAATGTGTCAGTTCAAAAGTTTAATTCTATTTGTAGAATCTGTTTCAGTCAGAATGATTTGAAGTCCTTTGAACAAGAGGGGTACTTATtggaattatttcttcatattacCAACATCGATGTCAGGCACCACAAAATACTACCCAGTAATGTTTGTAACTCATGTATCAATACACTCATAGATAttttgactttcattgaaatgtCAAAGTACAATAACCCACTAATAAAACAAGCTAAGGAAGACCAAATAATGGAATCTGAATCTAGGATTGCCAGTGAGAACAGCAATGTGCAAATGCCAACTCTTTCAGTATCAAAAACATCTTGGTATTCATCCAAAATTTGCAGAATATGTGCAAGTCTGAAGAATTTGGTACCATTTGAGGATGAATCTCATCTGTCTGTTTTTCATGCCATTACAGATATTGATATTTCTTCTGAAAACCTCCAATTTCTCATCTGCAAAAGATGTACTCAGAAACTTGAACAGAtttctgaatttatttattcatcaataCATAATGACGCCAGACTTCATCAAGCCCTAGGCAATAAAGAATCTTCTGAAAATTTACCTGAAGATAAGAAAATTATCTTAGTTGTTGAAAGATCTGATTCAGAAAGCAAACCATCCGTTGAAATGAAATCAGAACACATCCAACACTTGGATATTGAGTACATTGACTTGAAACCAAACGTGAAGGAAGAAAACATAGATATGTTTCATAGAGAAGTGAAAATTGGAGAGACCAAATGCAAAATAGAAGAAGatgcaatattttctgaatcaacCACAAATGGTAAAGACACAAGGTCTGTACAAACATTCGACACTATCCAGGAAAATTTGGAATATAAAGTGCCATTAACTCATAAACGTCAAAGTGAATACAAATGCGAGGTCTGCAGAAAAAattttcaaaCGCTACATTCCAAAAATAACCACATCGCATCTCACTTCGGAAAAAGTCCCGTTCTATGCGCTACATGCGGGAAATTTTTTGTCGGAAAAAAAGAATATCTCCTCCATTACAGGGTGCACACACCGAAAGGACCTAGAGTGAAGTGCAGAACATGCAGTCAATTGGTTATGAAGCGACTGCTCAAAGAACACTCGAAACTCCATTCAAACAAGCAGAATTCATACGGCGGAGAGAGACCTTTTCGTTGTGAAATGTGCGGCAAAACCTTCACCCAACGACATCATTTGAAAAGACACAAGAGACTGCACTATGAAGAAAAGCCATTTCCTTGTGACGTATGCCACAGAAGGTTTCCTCAACTTTCCCATTTGGATGCGCACAAGATTTTGCATACAGGAGAAAACCGCATAGAATGCGAAATATGCCACAAGTTATTTTCTCACGCCAGTGACCTGATGAGGCACATGACGAGGCACGCAAGGAAGAGACCTACATGCGAAATATGTAGCAGAAGTTTTCCCCATCATATCAATTTGAAGTGGCACATGAAATCGCATACAACAGGGAAACAACGTTGTGAAATATGTCCTTTGGTTTTCAGCAGCAATCACAGTTTGGAGCGACATGTGAGGGTGCATACCGGCGAGAAACCTTTCAAATGCGAGCTGTGTCAGAAGGCTTTCTCTCAGAGGAGTAATCTGAGAGTGCATTTGAATACACACAACTTGGAAAAATCGTGTCAAGTTTGTTCGGAAACCTTCAGCAGCGAAGAAAGTCTGAAAATACATCTGAGAGAACATAACGGGCAGGAATCGTTAACTTGCGACGTATGCCTCCGGGTTTTTTCTCGGAAAAGGCGCTTGCTAGATCATGAGAGAGTGCACACaggagaaaaaccattcaaatgCGACATTTGCCCCAAGAGCTTTTCCCAACTTAGATACTTGGCAGGACACATCAGCAAACACGAAAGCAATCAGCCGCAATGCGAGGTTTGTTTCAAGTACTTCACTCAGGAGGAAAGATTGAAAGTGCACATGAGGCTGCACACTGGAGAAAAACCCCAGTGTAAAATATGCATGAGGACTTTCGTGCGCCAAGGTGAGTTGAACGTGCACATGAAGAAACACAACCAAGAGAAATCGTTCAAGTGCGAGATATGCAAGAAGGCGTTCGTTCGAAAATGCGACTTGGTGAGGCATTCCAGGACGCATACTGAAGAGAAACCGTTCAAGTGTGGAATATGTTGGAAAACGTTCGCTTGGAAGTATTGTTTGACAAATCATGCGAAAGTGCATAAAGGAGTTCAGGTTAAGAAAGAGGAGGATTCTTGA
Protein Sequence: MSDEVMPNVSVQKFNSICRICFSQNDLKSFEQEGYLLELFLHITNIDVRHHKILPSNVCNSCINTLIDILTFIEMSKYNNPLIKQAKEDQIMESESRIASENSNVQMPTLSVSKTSWYSSKICRICASLKNLVPFEDESHLSVFHAITDIDISSENLQFLICKRCTQKLEQISEFIYSSIHNDARLHQALGNKESSENLPEDKKIILVVERSDSESKPSVEMKSEHIQHLDIEYIDLKPNVKEENIDMFHREVKIGETKCKIEEDAIFSESTTNGKDTRSVQTFDTIQENLEYKVPLTHKRQSEYKCEVCRKNFQTLHSKNNHIASHFGKSPVLCATCGKFFVGKKEYLLHYRVHTPKGPRVKCRTCSQLVMKRLLKEHSKLHSNKQNSYGGERPFRCEMCGKTFTQRHHLKRHKRLHYEEKPFPCDVCHRRFPQLSHLDAHKILHTGENRIECEICHKLFSHASDLMRHMTRHARKRPTCEICSRSFPHHINLKWHMKSHTTGKQRCEICPLVFSSNHSLERHVRVHTGEKPFKCELCQKAFSQRSNLRVHLNTHNLEKSCQVCSETFSSEESLKIHLREHNGQESLTCDVCLRVFSRKRRLLDHERVHTGEKPFKCDICPKSFSQLRYLAGHISKHESNQPQCEVCFKYFTQEERLKVHMRLHTGEKPQCKICMRTFVRQGELNVHMKKHNQEKSFKCEICKKAFVRKCDLVRHSRTHTEEKPFKCGICWKTFAWKYCLTNHAKVHKGVQVKKEEDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -