Came048479.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293418.1:1422118-1431554[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.043 7.3 9.2 1.2 8 20 136 148 135 150 0.91 2 19 0.00048 0.082 15.3 3.7 1 23 169 192 169 192 0.97 3 19 0.0071 1.2 11.6 0.7 1 17 218 234 218 235 0.91 4 19 0.0044 0.76 12.3 0.7 1 23 272 294 272 294 0.94 5 19 6e-05 0.01 18.1 2.0 2 23 299 320 298 320 0.97 6 19 0.0012 0.2 14.1 3.5 1 23 326 348 326 348 0.98 7 19 0.00087 0.15 14.5 1.8 1 23 355 377 355 377 0.95 8 19 0.0058 1 11.9 4.0 1 23 382 404 382 404 0.98 9 19 0.00011 0.018 17.4 3.8 1 23 409 431 409 431 0.99 10 19 0.0031 0.54 12.7 3.8 1 23 473 495 473 495 0.97 11 19 0.00063 0.11 14.9 0.9 1 23 501 521 501 521 0.98 12 19 0.00015 0.026 16.9 0.5 1 23 527 549 527 549 0.97 13 19 0.0054 0.94 12.0 0.2 1 23 555 577 555 577 0.93 14 19 1.4e-05 0.0024 20.1 2.8 1 23 583 605 583 605 0.98 15 19 0.0015 0.26 13.7 0.3 1 22 611 632 611 632 0.95 16 19 5.2e-05 0.009 18.3 1.9 1 23 639 661 639 661 0.97 17 19 3.4e-05 0.0058 18.9 2.0 2 23 665 686 665 686 0.98 18 19 0.00071 0.12 14.8 1.1 1 23 692 714 692 714 0.93 19 19 8.3e-05 0.014 17.7 1.5 1 23 720 743 720 743 0.97
Sequence Information
- Coding Sequence
- ATGGAAGTTGAATGCGAACAATCAGAAACTTGTTATAAATTGGAGACATATGAATTCGAACCCAAGGATGAATCAAGTCTGTTATGTTTCGTAAGCAATGTCGAACAAGTACCAACAGAAATCTACGAAGAAACACTTATAATAGAAGTAGTTGAAGATGATGATGAGCTCATGGCAGATATTGTTgatgaaaaatctggaagaaacaCGACACCAGAATTTGAACTAATAAAACCTACACATATAAAACGAGAACTCTCAGAAAATGTTGAGCCAGAGTGTTTTCCTTTCAAGAATGACCTTGAATTCAGACAAGAATTCGATGACGAAAGTTTCACCAAAGTACAAGTCAAAGATGAGTATTCGAAAGCTACTGGAGGTTTATCAGGTcctcgaataaaaaaaaaatctttctcaAGGCAGAGCCATTTCAATCGGCATATCACCAACCTCACTGGCAAAATCTCGCTGAAGTACAACACACATTCACCCACAAAGCAACCGTACAGTTGCAAGACATGTGGCAAACATTTCGCTTGGAAGAGAAATCTGAAGAATCACGTGAAAAAACTTCACCCTGAAGAAAGGGTTGATGCTAGCGAGGAGAGCTTCGTGAAGCCCAACAGGTTTCAGTTCCACCGCCGATCTGACCATCCATGCAAAGTGTGCCCTAGGAGTTTCAAGTTCCAATCCAGTCTCCTGAAATACCTGAAGGAGCACTCCTTGGAAAACATCGTTCGGAGAGCTGGGGAGGATAACGAGGCGAGAACGATTCGTCCTGctgacgacgacgacgacgacgacgaagGTCCTTTCCTGTGCGATATCTGCGGACAGTCCTTCTCGCTGGCGAAGTTTATCAGAAGGCACAAACTCTCGCACGAGAAGCCATTGCAGTGCGAATTTTGCGGCAATCGGTTCGCCCGCCATAGCGGTCTGCGGCAGCATTTGCGCTCTCACTTCGACAAGGCCAGGTTCCAGTGCGATATTTGCGGCAAGAGGTTTTTGATGAAGAGTAAATTCTTGCGCCACAAAAAGAGGCACTCTCAGGAGCCTGGCTCGTTCCTCTGCGACACCTGTGGAAAATTGTTCGTGACAAAAGaagGGTTTCACAAGCACGAGCGAATCCACCGAAAGAAAACTTTCGAATGTCACGTTTGCGGCCAATACTTCTCTTTGGCAGAGTTTTACCACGATCACATGAAACGCCATAAGAAGCGGATTTTCAAATGTACGTTGTGCCCTTTGGACTTCACTCGCCACGAACATTTGAAGGGTCACATGAAGATACACGACGAGAAAAGCAACTTCAGCCAACTGAAGGAAGATCGAACAGAATCGTCTCGAACGCTGGCAAACAGAAGAAAGTACCCCTCTCGTTCCGGGAAGTTGAAAGTCGACGAAGAAAAAGTCCCGCACCGCTGCAAAATCTGCTCTAAAACCTTCCCGTTCAAGAGCGTCCTCTCCTACCACGAGAAATCCCACTCGAAAGTCGAACGCTTCGAATGCCCGGTGTGCTCGAAAACCCTGAAGACGAACCTGGAGCGGCACATGAAAACCCACTCGGACGAGAGACCGTTCGCGTGCGCCGTCTGCAACAAAGCCTTCCGCATACGAGACCAGATGTACAAGCACATGAAAATCCACGCGGTCGAGCCGCCTTTCGTCTGTTCGATTTGCTCCAAGGGGTTCTTCTCGAGCTTCGCGCTCGCGTTGCATCGTGGCGCTCACTCCGACGGCGAGCCGTACCGGTGCAAGGTGTGCGACAGGAAGTTCTACCAGATGTCGCTGCTGCGAACGCACCTTAGGCAGCACACGGGAGACAAGCCGTTCCGGTGCGAGATTTGCGAGAAGAGGTTCGTCATTAAAGCCTTGTTGGGGAAGCACCAGAAGAAAAACCCCGATAAAAACTCGTTTGCGTGCGCCGATTGCGACAGGCGGTTCTGCTTCAAGAGAGACCTCACGGTGCACATGACGGTCCACAACGGCAACCGTTGCTCTTTTTGCGGAAAAGAGTTTCACGGCCAGTACGACTTGAACGTACACATGAGGTCGCATACCGGCGAGACCCCGTACGAGTGCTCGGTGTGCAAGAGGCGATTCGCGACCAAAAGTACTCGCAACCGACACGCCGTCCTGCACACGGAAGAGAAGCCGTTCGAGTGCCGAATTTGCGGCAAGAGGTTCCGGCGCGGCTTGCATTTGAAGGGGCACATGGAAAGGATTCACGGAGAGGGAAGGGTGTCCGAGCAGCCCGGTCGAGTTGAGATGGCCAAGAAAAGAGTCATTATCAAGGTAATGCGTGCTAAGAAAGTGAAAACAGCTGCTGAACcaaaaacgaaataa
- Protein Sequence
- MEVECEQSETCYKLETYEFEPKDESSLLCFVSNVEQVPTEIYEETLIIEVVEDDDELMADIVDEKSGRNTTPEFELIKPTHIKRELSENVEPECFPFKNDLEFRQEFDDESFTKVQVKDEYSKATGGLSGPRIKKKSFSRQSHFNRHITNLTGKISLKYNTHSPTKQPYSCKTCGKHFAWKRNLKNHVKKLHPEERVDASEESFVKPNRFQFHRRSDHPCKVCPRSFKFQSSLLKYLKEHSLENIVRRAGEDNEARTIRPADDDDDDDEGPFLCDICGQSFSLAKFIRRHKLSHEKPLQCEFCGNRFARHSGLRQHLRSHFDKARFQCDICGKRFLMKSKFLRHKKRHSQEPGSFLCDTCGKLFVTKEGFHKHERIHRKKTFECHVCGQYFSLAEFYHDHMKRHKKRIFKCTLCPLDFTRHEHLKGHMKIHDEKSNFSQLKEDRTESSRTLANRRKYPSRSGKLKVDEEKVPHRCKICSKTFPFKSVLSYHEKSHSKVERFECPVCSKTLKTNLERHMKTHSDERPFACAVCNKAFRIRDQMYKHMKIHAVEPPFVCSICSKGFFSSFALALHRGAHSDGEPYRCKVCDRKFYQMSLLRTHLRQHTGDKPFRCEICEKRFVIKALLGKHQKKNPDKNSFACADCDRRFCFKRDLTVHMTVHNGNRCSFCGKEFHGQYDLNVHMRSHTGETPYECSVCKRRFATKSTRNRHAVLHTEEKPFECRICGKRFRRGLHLKGHMERIHGEGRVSEQPGRVEMAKKRVIIKVMRAKKVKTAAEPKTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -