Came014642.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293411.1:106405107-106407990[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0022 0.37 13.2 0.5 2 23 171 192 170 192 0.96 2 23 0.31 54 6.5 0.4 5 17 202 214 201 215 0.90 3 23 7e-05 0.012 17.9 0.5 2 23 226 247 225 247 0.97 4 23 7.6e-05 0.013 17.8 4.4 1 23 275 297 275 297 0.97 5 23 0.016 2.8 10.5 10.5 1 23 303 325 303 325 0.98 6 23 0.026 4.5 9.8 2.9 1 23 331 353 331 353 0.99 7 23 0.0029 0.5 12.8 3.7 1 23 359 381 359 381 0.97 8 23 4.1e-05 0.007 18.7 2.8 1 23 387 409 387 409 0.98 9 23 0.25 43 6.7 6.1 1 23 415 437 415 437 0.95 10 23 8.1e-06 0.0014 20.9 3.5 1 23 442 464 442 464 0.98 11 23 0.026 4.5 9.8 0.1 1 20 470 489 470 491 0.94 12 23 0.00034 0.058 15.8 0.6 1 23 529 551 529 551 0.98 13 23 6.7e-05 0.012 18.0 2.3 1 20 557 576 557 578 0.95 14 23 0.0036 0.63 12.5 0.6 2 23 579 600 578 600 0.97 15 23 0.0086 1.5 11.4 3.4 1 23 606 628 606 628 0.96 16 23 2.8e-05 0.0049 19.2 2.8 1 23 634 656 634 656 0.99 17 23 0.4 70 6.1 5.5 1 19 662 680 662 682 0.96 18 23 4.4e-05 0.0076 18.6 1.1 2 23 684 705 683 705 0.97 19 23 0.0009 0.16 14.4 6.7 1 23 711 733 711 733 0.99 20 23 0.046 8 9.1 4.5 1 23 738 760 738 760 0.98 21 23 0.00058 0.1 15.0 5.0 1 23 766 788 766 788 0.99 22 23 0.00024 0.041 16.3 0.2 2 23 793 814 792 814 0.97 23 23 0.012 2.1 10.9 4.2 2 23 821 842 820 842 0.97
Sequence Information
- Coding Sequence
- ATGGATTATAAATGTTATGATAAGTTTAATTTAAAAAACCAGAATAATGATAATGGAACAAGGCAAGTTAAAAACGAAGATGACCATAGTATTTCCAATGAGACCCTGAATATCGAAATAGTGAAAACCGAGCCTTGCGAATTTCCCATCTTTAATGATTCTGAACAGTATGATGGTTTCAAACAAACAGAATTTGTGAATGTTGGGTATCTCAAGCAAGACGAAGAAAATCCGGACAATATCTCGCAAAACACAAGGCTAGTGGATGTGACTTGTTTAGATGTCAAAGGAAATAGTGAGTGTAAACTAGAAGAACCTCCTTGTGACCATGAAGAAAAATTTACCATCAAAGATGAGGACCACTCTAAATTCATTGATGTTTTTCCAACACATACTACTGCAAGTCAAATGATACTCATAAAAAATGAAGATAACATTGATATTGTCTATGAAGATATCAAACCCACCATAAGTGAAGAAGAAACAAGCAAATTCAAAACTATTCCCTTGCGATGTCGCAATTGCaaagaatatttcatttctaACAGTGAATTGATAGCTCATGAAAAGAATCATGCAGGAAAAAGTAAGTTTAAAAATAAAACCTGCCCTAAATCGTTTAAATCACACAGTTCTCTGAAAACTTACGAGATAATTCATGAAAAGAAGCCACTCCagtgcaaaatttgttcaaaatatttcgtCAATGTGTCTGATCTGAACATCCACACGAGACTTCATACAGGAAAAAGACGATATCGCTTCCCAACTGCGGGCAGTGTTTGCAAATCCCGTGAGGCAACTCGTGAAAGCGAGACGCCCTTTCGGTGTAAAATCTGCTCGAAATTTTTCCGTTCCAGCCGTCATCTGAAAGTCCACGAAAGTATCCATACAGGAGTAAAACCATATCAGTGTAAGACCTGTTCGAAGTCTTTCCATCACAAGTACGTCCTGAAGCGCCACGAGCATACTCATGAAGAAAAGCAACCCTATCAGTGCAAAGTCTGCCTTAAATCGCTCAGCTCCAGACGTTACTTGAGGTTCCATGAAAGGACGCACACAGGGGAGAAGTCGTTTCAGTGCAAGAATTGTTCAAAGTGTTTCTATACTGGTCTCAGTTTGAAACGCCACGAGATTATCCACAAAGAGGAGAATCCGTTTCGATGCCAGGTGTGTTCGAAGTCGTTTCAGTCCagaaactacttaaaagtgcaCAGGAGGATTCACACTGGGGAAAAACCGTTTCAGTGCAAAATTTGCTCGAAATCTTTCTCTTGTAGGCTCGGCTGGAAACGCCATGAGCATACGCATGAGAAGCGAGGCTTCCAGTGTGCAATCTGCTCTAAAACCTTCAGCTACAGCCACAGTCTGAAAACTCACCTGAAGATTCACACCGAGGAAGAAACGTTTCAGTGCAAAGTTTGCGTGAAGTCCTTCTTGAGCGCCGACGGTTTAAGAAACCACGAGCTCTTGAAATGCGAATCTCAGGATGAAAAACCGTTGAAATGTGAAACCTGCCTGGACACTTTTTACTGCAGCAAACATATGAAACACGACGCGGAAATCCTCAAAGAGGAAAAGCCGTTTCCTTGCGATACATGCTCGTTGTCTTTCGGCTCCGCGCAGCATTTGAAAGTCCACGAACGGATTCACACGCTAGAAAAGCCGTTTCAGTGCAAGGTTTGCTTGAAGACTTTCTCCTTCAGCTACAACTTGAAGCGACACGTGCATCTGCAATGTGAAGCCTgtctgaaatatttcaactcGCAAAGATATCTGTTGATCCACCAAAGGATTCACACGGGGGAACGGCCGTTTCAGTGCCAGGTCTGCTTGAAGTCGTTCTTTAACGGGCACAGTTTGAAGCGCCACGAGTTTATCCACGGGGAGGAGATCAAATATCAGTGCGATTTCTGCTCAAAGTCGTTCAGCTCCTTGAACTATTTGAGGGCCCACAAGAAGAGTCACACGGGCGACAACGCGTTTCAGTGCAAACTTTGCCTGAAGTCGTTCTCTTGCCCTAATAATTTCAAACGCCACGAGCACTTGAAATGCGAGGTCTGCTCGAAGCCGTTCAACTCGCGAAACTACTTGAGACTGCACCAGCGACTGCACACGGGCGAGAAACCGTTCCAATGCAAGACCTGTTTGAAGCGTTTCCACCAGAACCAAACCCTAAAACGCCACGAGCGGACTCACGAGGGTAGGCCGTATCAGTGTCACGTTTGCTCCAAGAATTTCAGCTGCGAGAATTATTTGAGCATCCACGAAAGGATTCACTCGGGAGAGAAGGCGTATCGATGCAAAATCTGCTCGAAAACTTACTCTTGCAGCAGCAGTTTGAATCGCCACGAGCAAACGCACGAAGAGAGTATAAAGTGTAAAATCTGTTCGGAAGTTTTTGGCACTAGAGTGAAGTTGCGCGTTCACGAAAGAATTCATACAGAAGAAGAAGCGATTCAGTGCAAAATCTGTTTGAGGTTTTTCGAATACAAGTGCAGATTGAAGCGTCATTTGAAGGTTCACGCTGGGGAAACGGTCTCTCCCAAATCTCTGTGTTGA
- Protein Sequence
- MDYKCYDKFNLKNQNNDNGTRQVKNEDDHSISNETLNIEIVKTEPCEFPIFNDSEQYDGFKQTEFVNVGYLKQDEENPDNISQNTRLVDVTCLDVKGNSECKLEEPPCDHEEKFTIKDEDHSKFIDVFPTHTTASQMILIKNEDNIDIVYEDIKPTISEEETSKFKTIPLRCRNCKEYFISNSELIAHEKNHAGKSKFKNKTCPKSFKSHSSLKTYEIIHEKKPLQCKICSKYFVNVSDLNIHTRLHTGKRRYRFPTAGSVCKSREATRESETPFRCKICSKFFRSSRHLKVHESIHTGVKPYQCKTCSKSFHHKYVLKRHEHTHEEKQPYQCKVCLKSLSSRRYLRFHERTHTGEKSFQCKNCSKCFYTGLSLKRHEIIHKEENPFRCQVCSKSFQSRNYLKVHRRIHTGEKPFQCKICSKSFSCRLGWKRHEHTHEKRGFQCAICSKTFSYSHSLKTHLKIHTEEETFQCKVCVKSFLSADGLRNHELLKCESQDEKPLKCETCLDTFYCSKHMKHDAEILKEEKPFPCDTCSLSFGSAQHLKVHERIHTLEKPFQCKVCLKTFSFSYNLKRHVHLQCEACLKYFNSQRYLLIHQRIHTGERPFQCQVCLKSFFNGHSLKRHEFIHGEEIKYQCDFCSKSFSSLNYLRAHKKSHTGDNAFQCKLCLKSFSCPNNFKRHEHLKCEVCSKPFNSRNYLRLHQRLHTGEKPFQCKTCLKRFHQNQTLKRHERTHEGRPYQCHVCSKNFSCENYLSIHERIHSGEKAYRCKICSKTYSCSSSLNRHEQTHEESIKCKICSEVFGTRVKLRVHERIHTEEEAIQCKICLRFFEYKCRLKRHLKVHAGETVSPKSLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -