Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293411.1:37066989-37081906[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0001 0.018 17.4 3.2 1 23 248 270 248 270 0.97

2 13 2.3e-05 0.0039 19.5 1.8 1 20 276 295 276 298 0.94

3 13 0.00011 0.019 17.3 1.0 1 23 304 326 304 326 0.98

4 13 0.00013 0.022 17.1 4.0 1 21 332 352 332 354 0.94

5 13 7.3e-06 0.0013 21.0 4.6 1 23 360 382 360 382 0.99

6 13 1.3e-05 0.0023 20.2 5.8 1 23 388 410 388 410 0.97

7 13 4e-06 0.0007 21.8 6.1 1 23 416 438 416 438 0.96

8 13 8.7e-08 1.5e-05 27.1 2.7 1 23 444 466 444 466 0.98

9 13 6.4e-05 0.011 18.0 6.7 1 23 472 494 472 494 0.97

10 13 0.0001 0.018 17.4 4.6 1 23 500 522 500 522 0.98

11 13 3.9e-07 6.7e-05 25.0 4.8 1 23 528 550 528 550 0.98

12 13 1.2e-06 0.00021 23.5 6.5 1 23 556 578 556 578 0.98

13 13 2.5e-05 0.0043 19.3 9.1 1 23 584 606 584 606 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0001	0.018	17.4	3.2	1	23	248	270	248	270	0.97
2	13	2.3e-05	0.0039	19.5	1.8	1	20	276	295	276	298	0.94
3	13	0.00011	0.019	17.3	1.0	1	23	304	326	304	326	0.98
4	13	0.00013	0.022	17.1	4.0	1	21	332	352	332	354	0.94
5	13	7.3e-06	0.0013	21.0	4.6	1	23	360	382	360	382	0.99
6	13	1.3e-05	0.0023	20.2	5.8	1	23	388	410	388	410	0.97
7	13	4e-06	0.0007	21.8	6.1	1	23	416	438	416	438	0.96
8	13	8.7e-08	1.5e-05	27.1	2.7	1	23	444	466	444	466	0.98
9	13	6.4e-05	0.011	18.0	6.7	1	23	472	494	472	494	0.97
10	13	0.0001	0.018	17.4	4.6	1	23	500	522	500	522	0.98
11	13	3.9e-07	6.7e-05	25.0	4.8	1	23	528	550	528	550	0.98
12	13	1.2e-06	0.00021	23.5	6.5	1	23	556	578	556	578	0.98
13	13	2.5e-05	0.0043	19.3	9.1	1	23	584	606	584	606	0.98

Sequence Information

Coding Sequence: ATGAACATCGATATCTTAGATGATAGTGTCAACTGCCAGGATTATCtgaaagttttgtatttacAAGGATATGTATCAGCAATAAACTCTTACACTAGAGTACAAGGTGAAAGTAATTCATGTCTAGATCATATCTTTCTGAAGACAAAAACTAATTTGGATACATTCCTTCCACTAGTAATCAACTTTGGAATCACTGATCACTATCCTGTTGTTCTACAATGTCTTTTTCCGGAGGAGCAGGAGAGTGGAGATAACTATGTAAGATTGGAGAACTCTGAAACTAACCAGCACCAATCCAATAGTGAAGCAGATGCATTGACTGAGACAATACAAATAGTAAAAGATGAGAAAACATTTCAGAACTGTAAGCTACTTTCCGGAGCTCAGTTTGGACTTCAGGATATTAAAGCAAATATGATGGATGTGAGGACTGCTGATGGTAGTATAGTAAAAATACAGACAAACATGCAGGAACAAGAATTAGTGAAGGCTCTGGGTGTTGATATTGTGAATAATATGTATAAGGTTAATGTGGATGACTTGAATCAGTTATTAGCATATCACGAAATTTTTGGGAAACTACAAAATGGTCAGGGTGGTGAAATATCGAATGTCAGTCAGAACGTAGGCCAAACTAATCTGAATATATCCAATTCAAATATAACAATAGTTACCAAAGATGAACAAGAACCATCAACAAGCAACATAAATAACGAAAATATACCAGTAGTTGGTACACATACTTGTGATCTCTGTGGTAAAATGTTTCAGTTTCGTTACCAACTAATCGTACATAGACGTTACCATACTGAACGCAAACCTTTTACTTGTCAGGTGTGTGGAAAGGCTTTTAGTAATGCCCAAGAACTCACTCGACATGGAAAATGTCATTTAGGGGGAAGCATGTTCACATGTGCTGTTTGCTTTCATGTGTTCGCAAATGATGCTTCATTAGAACGCCATATGAAGAGACATTCTACTGATAAACCATATGCTTGCACTCTTTGCGGGAAGACTTTCGCACGAAAGGAACATCTGGATAATCATACAAGATGTCATACAGGTGAAACTCCTTACAGATGTCAATATTGTGCAAAAACTTTCACAAGAAAAGAACATATGGTAAACCATATAAGGAAACACACAGGTGAAACTCCACACAAATGCGAAATTTGTAAGAAATCTTTCACGAGAAAGGAGCACTTTACAAATCATGTAATGTGGCATACTGGACAAACTCCTCATCACTGTAATATATGTGGAAAAAAATACACCAGGAAAGAACACTTGGCCAATCATATGAGAGGCCATACTAATGATACTCCCTTCAGgtgtgAAATTTGTGGAAAATCCTTTACAAGAAAGGAACATTTTACGAATCACATAATGTGGCATACAGGTGAAACTCCGCATCGTTGTGATTTTTGCTCCAAAACGTTTACTCGAAAAGAACATTTATTGAATCATGTGAGGCAACACACAGGTGAATCACCACATCGTTGTGGATATTGCGCCAAATCATTTACGAGAAGAGAACATATGGTCAACCATATTAGGCAGCATACAGGAGAGACACCATTCAGATGCACTCATTGTCCGAAAGCTTTCACAAGAAAAGACCATCTTGTGAATCACATCCGACAACACACTGGGGAATCTCCACACAAGTGTACCTATTGTCCAAAGTCGTTCACCAGAAAAGAACACCTGAATAATCATGTGCGACAACATACAGGAGAGTCTCCACACAGGTGTCATTTTTGTTCAAAGTCTTTCACTAGAAAAGAACACTTGACTAATCATGTCAGAATTCATACAGGTTTGtaa
Protein Sequence: MNIDILDDSVNCQDYLKVLYLQGYVSAINSYTRVQGESNSCLDHIFLKTKTNLDTFLPLVINFGITDHYPVVLQCLFPEEQESGDNYVRLENSETNQHQSNSEADALTETIQIVKDEKTFQNCKLLSGAQFGLQDIKANMMDVRTADGSIVKIQTNMQEQELVKALGVDIVNNMYKVNVDDLNQLLAYHEIFGKLQNGQGGEISNVSQNVGQTNLNISNSNITIVTKDEQEPSTSNINNENIPVVGTHTCDLCGKMFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNAQELTRHGKCHLGGSMFTCAVCFHVFANDASLERHMKRHSTDKPYACTLCGKTFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHIRKHTGETPHKCEICKKSFTRKEHFTNHVMWHTGQTPHHCNICGKKYTRKEHLANHMRGHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGYCAKSFTRREHMVNHIRQHTGETPFRCTHCPKAFTRKDHLVNHIRQHTGESPHKCTYCPKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -