Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293413.1:380840-390544[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.1e-05 0.011 18.1 5.0 1 23 213 235 213 235 0.98

2 12 0.00022 0.037 16.4 5.4 1 23 241 263 241 263 0.97

3 12 6.7e-08 1.2e-05 27.4 1.9 3 23 271 291 269 291 0.96

4 12 6.4e-05 0.011 18.1 0.5 1 23 297 319 297 319 0.97

5 12 1.6e-05 0.0027 20.0 0.4 1 23 325 347 325 347 0.98

6 12 0.0011 0.18 14.2 1.9 1 23 353 375 353 375 0.98

7 12 1.8e-06 0.00032 22.9 1.2 1 23 381 403 381 403 0.97

8 12 5.3e-06 0.00092 21.5 0.2 1 23 409 431 409 431 0.98

9 12 3.2e-07 5.5e-05 25.3 1.8 1 23 437 459 437 459 0.99

10 12 4.4e-07 7.5e-05 24.9 0.1 1 23 465 487 465 487 0.99

11 12 6.6e-07 0.00011 24.3 0.5 1 23 493 515 493 515 0.98

12 12 2.8e-06 0.00048 22.3 1.6 1 23 521 543 521 543 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.1e-05	0.011	18.1	5.0	1	23	213	235	213	235	0.98
2	12	0.00022	0.037	16.4	5.4	1	23	241	263	241	263	0.97
3	12	6.7e-08	1.2e-05	27.4	1.9	3	23	271	291	269	291	0.96
4	12	6.4e-05	0.011	18.1	0.5	1	23	297	319	297	319	0.97
5	12	1.6e-05	0.0027	20.0	0.4	1	23	325	347	325	347	0.98
6	12	0.0011	0.18	14.2	1.9	1	23	353	375	353	375	0.98
7	12	1.8e-06	0.00032	22.9	1.2	1	23	381	403	381	403	0.97
8	12	5.3e-06	0.00092	21.5	0.2	1	23	409	431	409	431	0.98
9	12	3.2e-07	5.5e-05	25.3	1.8	1	23	437	459	437	459	0.99
10	12	4.4e-07	7.5e-05	24.9	0.1	1	23	465	487	465	487	0.99
11	12	6.6e-07	0.00011	24.3	0.5	1	23	493	515	493	515	0.98
12	12	2.8e-06	0.00048	22.3	1.6	1	23	521	543	521	543	0.99

Sequence Information

Coding Sequence: ATGGCATATGAGACTGTTTCTATTGATAAAATTTGTAGGACCTGTTTATCAGAAGAAAGCGATATGAAGTCCGTATTTAGTATAGAAGAATCAACTGGAGAAAATCTAAGAATTTTCGAAATGCTCATGACATGTACCTCTATCCAGGTGATGACTGACGATGGATTACCGAGCCAAGTATGCTTGCAATGTGTTCACTACATAACGAgagcattttcattcaaacaacTCTGTGAAAGGTCAGATAACACTCTTCGAGAACTACTAGAACGACCGTTCCAACAGACGTTTCTAGAGTTGAAACCTTTACTCGCGTCCGATTCTTTGGTATCTAGTTCTGTTGCAGAAATCATCACTGGCATTCCCCAGTTGTCGACAGCTGAAGATGTTGTTTTAGACGAGGTGATGCCGATTCAGCAGCCACAAGCTACTCTGGTGCAAAATGTCCCAGCTGAAATTGTGTTGGAAGAGCCCCAAAATGAcctcaaattgaaatatgagCTCTACGAGAACAATGGGTTTACCAATGATATAGATAGCGATACTGGTCAAGACGAGAAGGCAAAAGATGACATGGTAATGGAGGAGAAAGAAGTCATGAAAAAAAGTTTGCAAGATGAAACTGAACAGCCTATTTTCCCATGTGAACGATGTACGTGTTGTTTTACTACGCAGTCTGACTTGAAGGCGCACGCCAAAACCCACCTGAAACCGAGCGGCCACACTTGCAAGACGTGCAACCAGAGCTTCGCCAGCGCGAGCACCCTGTGCCGTCACTCGAAAGTGCACGAAGGCGCCAAGCGCCACCTGTGCAGCGAGTGCGGCAAAGGCTTCTCCAGATCGGACGATCTGACGCGTCATCTGCGGACGCACACCGGGGAAAAACCGTTCGCCTGCAAGCTGTGCGACAAGTCGTACGCGCAATCGTTCAGGTTGCTGGAGCACATGCGGGCGCACGCCGACGAGAAGAAATTCGTGTGTTCGGTGTGCGCGAAGGCTTTCTCGAGGTACACGAGCTTGGCGGCGCACACCAAAACGCACAGCGGAGTCAAGACGCACGTTTGTTCCGTCTGCGAAAAGAGGTTATGTGGGTCAGGATCGTTGGCGATGCATATGAAAACGCATACGGGGCTCAAAGATCACATATGCCCGTTCTGTTCGAGAGGCTTCACCACCCCCAGCAATCTCATCATCCACAAAAGAACTCACACAGGCGAACGACCTTACGTATGCACGACGTGCGGCAAGGGATTCCCCGATCCTTCCAGATTGACCGTCCACTCTAGGTCTCACAGCGGAGAAAAACCCTACGTGTGCAACACGTGCGGACGGGGCTGCGTCAGCTCGTCTCAGCTGAAGAAACACATGCGGATTCACACCGGGGAACGGCCTTACCAGTGCAGCTTGTGTCCGAGAGCTTTCCCGAGGAGCGAGGATTTGAATATCCACATCAAGACCCATACAGGTGAAAGAGATTTCGTTTGTCCCTTTTGCAAGAAGGGGTTCTATCAGGCTTCCACCCTTAAGGTCCACATCAGGATCCACACCGGAGAAAAACCTTACAAGTGCAATATTTGTTACAAATCCTTCTCCCAAACCGGCCCTCTTTCCACGCACATGAAGACCCACTGA
Protein Sequence: MAYETVSIDKICRTCLSEESDMKSVFSIEESTGENLRIFEMLMTCTSIQVMTDDGLPSQVCLQCVHYITRAFSFKQLCERSDNTLRELLERPFQQTFLELKPLLASDSLVSSSVAEIITGIPQLSTAEDVVLDEVMPIQQPQATLVQNVPAEIVLEEPQNDLKLKYELYENNGFTNDIDSDTGQDEKAKDDMVMEEKEVMKKSLQDETEQPIFPCERCTCCFTTQSDLKAHAKTHLKPSGHTCKTCNQSFASASTLCRHSKVHEGAKRHLCSECGKGFSRSDDLTRHLRTHTGEKPFACKLCDKSYAQSFRLLEHMRAHADEKKFVCSVCAKAFSRYTSLAAHTKTHSGVKTHVCSVCEKRLCGSGSLAMHMKTHTGLKDHICPFCSRGFTTPSNLIIHKRTHTGERPYVCTTCGKGFPDPSRLTVHSRSHSGEKPYVCNTCGRGCVSSSQLKKHMRIHTGERPYQCSLCPRAFPRSEDLNIHIKTHTGERDFVCPFCKKGFYQASTLKVHIRIHTGEKPYKCNICYKSFSQTGPLSTHMKTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00329851;
90% Identity: iTF_00329851;
80% Identity: -