Came049028.2
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293418.1:10471132-10477129[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00014 0.024 17.0 0.2 2 21 158 177 157 178 0.94 2 18 1.1e-06 0.00019 23.6 2.9 1 23 187 209 187 209 0.98 3 18 3.4e-06 0.00059 22.1 0.3 1 23 215 238 215 238 0.96 4 18 0.00048 0.083 15.3 0.3 1 23 244 266 244 266 0.96 5 18 0.039 6.8 9.3 2.3 1 23 272 294 272 294 0.89 6 18 0.0092 1.6 11.3 0.4 2 19 320 337 319 339 0.91 7 18 0.00057 0.099 15.1 0.9 1 23 348 370 348 370 0.92 8 18 4.4e-06 0.00076 21.7 2.3 1 23 376 398 376 398 0.97 9 18 8.9e-06 0.0015 20.7 6.7 1 23 404 426 404 426 0.98 10 18 0.002 0.34 13.4 4.7 1 23 432 454 432 454 0.98 11 18 0.0011 0.19 14.2 1.3 1 23 460 482 460 482 0.96 12 18 0.014 2.4 10.7 2.1 1 23 511 533 511 533 0.96 13 18 0.00019 0.033 16.5 0.9 2 23 562 583 561 583 0.96 14 18 2.2e-05 0.0037 19.5 0.8 2 23 590 611 589 611 0.95 15 18 6.7e-06 0.0012 21.1 1.2 1 23 617 639 617 639 0.98 16 18 7.4e-06 0.0013 21.0 2.2 1 23 645 667 645 667 0.99 17 18 1.7e-07 2.9e-05 26.2 0.6 1 23 673 695 673 695 0.99 18 18 0.003 0.52 12.8 1.3 1 23 701 723 701 723 0.98
Sequence Information
- Coding Sequence
- ATGGAAAAAGAATATTTCGGTAAAATATCTATTGAAGATTTTTCTCACATTTGTCGAACTTGTTTGAATAAAGAAGGATTGAAGCCTTTAGATGAAATtctgtttttgaatttattgaatactTTAACAGATATCCAgATTGATGATGAATTACCAAAGAATATTTGTAACAAATGCATCAATAAATTGGAGGAGGTGTCTTCATTCATAACAGCTTCAAAAAATAGTGACCACTACCTCAAACAAATTGTTGGAATAAGCAAAACTGAACAGCTCCCTGAAATTGAATCTGAACCATCTAATATTTCATGTCATACAGATGATCATGACAGTtctgaagtttatgaagaactttctgagaaaattgagattgatgaaataaaaagttcTGAATCAGTAAAAGAAGGAAGAAAGTGTGCCACAACTCGTAAAAGCCAGAAATCCAAATGCTCAGATGACACAAAACCAATAACATGTACTGTTTGTGGTGCAAACTTCTCCACAAAAAAACTATTGCAAGTacatcaaaacaaaaatgttggcTGTAAAACTAAACAGTTTAACTGTAATGACTGTGATAAATCTTTTAATTCAAAGTTCAGGTTAAATTTACATATGAGGACACATACAAAAGAGACACCTTATGAATGCAAAATCTGTCTTAAGAAGTTTCGACAAGCTCCTAATCTTAAACGACATATTGACATTATACATAAAGGATTAAAACCATTTAAGTGTGAGGTTTGTGGAAAAGAATTCTCAAGACTGGTAGCAAAGAATGAACACGTATATATGCATACAGGACAAAAACCGTATGTATGTAGTTATTGTGGAGAAACTTTCGGTACGTACACGAACCATTTTGCTCACACTTATTTGCATAGGATCAACAATGGAGAAATCAGAGGAACGACCATAATCGCTAGAAAATCCGACAAATCCGATCAGTTACTTGTGGAATGTACGGTTTGCAACAAGACATTTTCCTCGCCTAGGGCCATCTTTCAGCACTCACACGCCAAAGATGAATCACATAAAGAATTTCTATGTACGGAATGCGGCAAGATATTTCTGCGAAAATCACAACTGCAGACCCATTCTCTTCTGCATACCGGCGAGAAGCCTTTTGTGTGCAAATACTGTGGAAAGCAATTCAGACATGCCAGTGGCTATAAAAATCACATTTTATTACACACCGGGGAGAAGCCGTACTGCTGCAAGACCTGCCAAAAAAGTTTTGTTCAGTCGGAGCACCTGAAACAGCATATGAAAGTCCATACGGGCGAGAGACCCTACAAGTGCAGCTGTTGTGGAAAGGATTTTGCTCAGAAGTGCAATTTGGTGGTGCACAAAAGGATTCACACAGGAGAAACGCCATACTTTTGCTCAGTCTGTGGAAAAGGGTTTTATGATTCTACAAGGATGAAGAAACACGAGAAGGGACATAGCAAGCAAGCCAAGAAAAAAGTGGACTTTGCCACTTTCCTGAGAATAACCGAGCACCTGAGAATCCATACCGGAGAACGTCCACACATCTGCAGCTACTGCGGCGAGGGCTTCAAGAAATACTCGACTCGTTACGCCCACGAGATGCGTCACAAGGTCAAAAACGGCGAAATCCCCAAGAGCGACAAGAATCCCAAAAAGTACCCCCGTAAAAAACCTTCGGACCCTACAGAGCTGCAGTGCGACACCTGTAACAAGACGTTCTCCTCCAAACAAGCGATGCTAGTGCACAAGCAAATACACTTGGGCGAAAAGCCTTTTTTGTGTACGGCGTGTGGGAAGGGCTTTATTCGCAAGAGTCACCTGGACGTGCACCTGAGGATCCACACGGGCGAGCGGCCGTACGAGTGCGGCGAGTGCGGTAAACGTTTCAGGCAAGCGGCCTGCTTCCGCAACCATCTTTTGATACACAGAGGCGAACGGTCTTTCAAATGCGACGTTTGTCAAAGGACTTTCGTTCAGATCGGACATTTGCAAAGCCACCTCAAAACGCACACCGGTGAAAAACCCTACAGATGTACGTTTTGCGGAAAGGAGTTCGCGCAGAACGGAAACTTGAAGGCGCACACTAGGATACACACGGGGGAGCGACCTTTCAGGTGTGTTATTTGTTACTTGGGCTTTCATGATTCGCCTGGTCTCAAGAAACATTTGAAATCCCATAAAGTTAAAGGCGAGGACAGTGCCGTAGACAATTATCAAGCTACCAAAAATtga
- Protein Sequence
- MEKEYFGKISIEDFSHICRTCLNKEGLKPLDEILFLNLLNTLTDIQIDDELPKNICNKCINKLEEVSSFITASKNSDHYLKQIVGISKTEQLPEIESEPSNISCHTDDHDSSEVYEELSEKIEIDEIKSSESVKEGRKCATTRKSQKSKCSDDTKPITCTVCGANFSTKKLLQVHQNKNVGCKTKQFNCNDCDKSFNSKFRLNLHMRTHTKETPYECKICLKKFRQAPNLKRHIDIIHKGLKPFKCEVCGKEFSRLVAKNEHVYMHTGQKPYVCSYCGETFGTYTNHFAHTYLHRINNGEIRGTTIIARKSDKSDQLLVECTVCNKTFSSPRAIFQHSHAKDESHKEFLCTECGKIFLRKSQLQTHSLLHTGEKPFVCKYCGKQFRHASGYKNHILLHTGEKPYCCKTCQKSFVQSEHLKQHMKVHTGERPYKCSCCGKDFAQKCNLVVHKRIHTGETPYFCSVCGKGFYDSTRMKKHEKGHSKQAKKKVDFATFLRITEHLRIHTGERPHICSYCGEGFKKYSTRYAHEMRHKVKNGEIPKSDKNPKKYPRKKPSDPTELQCDTCNKTFSSKQAMLVHKQIHLGEKPFLCTACGKGFIRKSHLDVHLRIHTGERPYECGECGKRFRQAACFRNHLLIHRGERSFKCDVCQRTFVQIGHLQSHLKTHTGEKPYRCTFCGKEFAQNGNLKAHTRIHTGERPFRCVICYLGFHDSPGLKKHLKSHKVKGEDSAVDNYQATKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -