Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293418.1:1107427-1116159[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.0099 1.7 11.2 2.8 1 23 25 47 25 47 0.99

2 25 0.036 6.2 9.4 1.1 3 23 59 79 58 79 0.98

3 25 6.5e-06 0.0011 21.2 3.7 1 23 85 107 85 107 0.98

4 25 3.8e-05 0.0066 18.8 3.3 1 23 113 135 113 135 0.98

5 25 0.011 1.9 11.0 5.2 1 23 141 163 141 163 0.97

6 25 0.00035 0.061 15.7 0.5 1 23 189 211 189 211 0.98

7 25 0.0004 0.069 15.5 0.2 1 23 217 239 217 239 0.98

8 25 0.00025 0.042 16.2 2.9 1 23 246 268 246 268 0.97

9 25 0.0006 0.1 15.0 2.4 1 23 302 324 302 324 0.98

10 25 0.00021 0.036 16.4 2.5 1 23 330 353 330 353 0.96

11 25 0.0014 0.24 13.8 1.0 1 23 363 385 363 385 0.97

12 25 0.00021 0.037 16.4 0.8 2 19 392 409 391 413 0.93

13 25 1.1e-05 0.0018 20.5 0.3 1 23 440 462 440 462 0.99

14 25 0.00025 0.042 16.2 2.9 1 23 469 491 469 491 0.97

15 25 0.0006 0.1 15.0 2.4 1 23 525 547 525 547 0.98

16 25 0.00023 0.039 16.3 4.0 1 23 553 575 553 575 0.98

17 25 0.0019 0.32 13.4 1.0 1 23 581 603 581 603 0.98

18 25 0.084 15 8.2 6.3 1 23 609 631 609 631 0.96

19 25 2.4e-06 0.00042 22.5 2.2 1 23 637 659 637 659 0.97

20 25 2.9 5e+02 3.4 2.6 1 12 665 676 665 681 0.89

21 25 0.0049 0.84 12.1 4.1 1 23 691 713 691 713 0.99

22 25 0.036 6.2 9.4 1.1 3 23 725 745 724 745 0.98

23 25 5.8e-05 0.01 18.2 6.2 1 23 751 773 751 773 0.98

24 25 0.00011 0.019 17.3 6.3 1 23 779 801 779 801 0.98

25 25 0.02 3.4 10.2 5.2 1 23 807 829 807 829 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.0099	1.7	11.2	2.8	1	23	25	47	25	47	0.99
2	25	0.036	6.2	9.4	1.1	3	23	59	79	58	79	0.98
3	25	6.5e-06	0.0011	21.2	3.7	1	23	85	107	85	107	0.98
4	25	3.8e-05	0.0066	18.8	3.3	1	23	113	135	113	135	0.98
5	25	0.011	1.9	11.0	5.2	1	23	141	163	141	163	0.97
6	25	0.00035	0.061	15.7	0.5	1	23	189	211	189	211	0.98
7	25	0.0004	0.069	15.5	0.2	1	23	217	239	217	239	0.98
8	25	0.00025	0.042	16.2	2.9	1	23	246	268	246	268	0.97
9	25	0.0006	0.1	15.0	2.4	1	23	302	324	302	324	0.98
10	25	0.00021	0.036	16.4	2.5	1	23	330	353	330	353	0.96
11	25	0.0014	0.24	13.8	1.0	1	23	363	385	363	385	0.97
12	25	0.00021	0.037	16.4	0.8	2	19	392	409	391	413	0.93
13	25	1.1e-05	0.0018	20.5	0.3	1	23	440	462	440	462	0.99
14	25	0.00025	0.042	16.2	2.9	1	23	469	491	469	491	0.97
15	25	0.0006	0.1	15.0	2.4	1	23	525	547	525	547	0.98
16	25	0.00023	0.039	16.3	4.0	1	23	553	575	553	575	0.98
17	25	0.0019	0.32	13.4	1.0	1	23	581	603	581	603	0.98
18	25	0.084	15	8.2	6.3	1	23	609	631	609	631	0.96
19	25	2.4e-06	0.00042	22.5	2.2	1	23	637	659	637	659	0.97
20	25	2.9	5e+02	3.4	2.6	1	12	665	676	665	681	0.89
21	25	0.0049	0.84	12.1	4.1	1	23	691	713	691	713	0.99
22	25	0.036	6.2	9.4	1.1	3	23	725	745	724	745	0.98
23	25	5.8e-05	0.01	18.2	6.2	1	23	751	773	751	773	0.98
24	25	0.00011	0.019	17.3	6.3	1	23	779	801	779	801	0.98
25	25	0.02	3.4	10.2	5.2	1	23	807	829	807	829	0.97

Sequence Information

Coding Sequence: ATGCTAGTTGGTGCTTCTGCTAGATTTCACAATTGCGGGACAAAACGAGCGGATGAAACGAACAAGGAGACATTCCAGTGCAAATTCTGTTCGGATTCTTTTCCCACCAGATATCGCCTTGCGAAACACAACAGAACTCATACCGGAAAAAAGCCGTCCAGTTTCAGAGTTCTATGCAAATTCTGCTCTAAACCTTTTCCTTCTAGAACTAAAGCTAGAACGCACGAAAGAATTCATACCGGAGAAAAACCTTTCGTTTGCAACTTCTGTTCTAAATCCTTCATTCAACAAAGCCACTTGGTGAAACATGAGAAAACTCATACTGGAGAAAATGGATTCAACTGCAAAATCTGTTCCAAGCCGTTTTCTACTAGATTTCGCCTAGAGAGACACTACAAAACTCATACCACAAAAGAAGCTTTTCACTGCAAAATCTGTTCACATTCTTTTATCAAACACGATGACTTGGTTGCCCATGAGAAAAGTCACACCAAGGAAAGACCGTATCACTGCAaagtctATTCCGGGACACAGCTATATGTCGATGAAACAGATAAGAAGACATTCCAGTGCCAAGTCTGTTCTAAACCTTTTCCTACTAGAACTAAAGTAAGAATACACGAAAGAATTCACACCCGAGGAAAATCTTTCATTTGCGAAATCTGTTCCAAACCTTTGTCCACTGGATTCAGCCTGGCAAGACACATCAAAACTCACACCGGAAAGGAGGAAGCTTTCCACTGCAAAGTCTGTTCACGTTCTTTCATCACACACGACGACTTGATGGCCCATGAGAAAATTCATACCAAAGATGGACCGTTTTGCTGCAaagtctgttcgaaatcttttcTGTATCGTCATCGTTGTGTAAAACATGAAAGAATTCACACCGCCGAGAAACGTTACAATTGCAAATTCTGTTCCAAATCCTTCGTCCAACCGAACCACGTGGTGAAACATGAGAAAGTCCATACTGGAGAAAATCGATTCAGCTGCGAAACCTGTTCCAAACTTTTTTCTTCTAAATCTCGCCTAGAAAGACACCAAAAACTCACACATGAGAAATGTCACACCAAAGAAAGTCCGTATCACTGCAAAGTCTGCTCGAAATCTTTTCCTTCTCGTTCTGTTTGGATAAATCACGAACAAATTCACACCGGAGAGAAACCTTCTCGGTGCAAAGTATGTTCCAAAGTTTTTAGTCGAAAAGACCACTTGGACGCACATGCGCCTGTTCATACTAGAGAAAAACCTTTCAAGTATCGCGAGGCAAAGCTATATCGCCCAAAACAAGTAAATAAAACGAACAAGAAGACATTCCAGTGCGAAATCTGTTCCAAACCTTTGTCCACTGCATTCAGCCTGGCAAGACACATCAAAACTCACACCGGAAAGGAGGAAGCTTTTCACTGCAAAGTCTGTTCACGTTCTTTCATCACACACGACGACTTGATGGCCCATGAGAAAATTCATACCAAAGATGGACCGTTTTACTGCAaattctgttcgaaatcttttcCTTATCGTCATCGTTGTGTAAAACATGAAAGACTTCACACCGCCGAGAAACGTTACAATTGCAAATTCTGCTCCAAATCCTTCGTCCAACCGAACCACGTGGTGAAACATGAGAAAGTCCATACTGGAGAAAATCGATTCAGCTGCAAAATCTGTTCCAAACTTTTTTCTTCTAAATTTCGCCTAGAAAGACACCGCAAAACTCATACTGGACAGGAAGCTTTCCAGTGCAAGGTCTGTTCATATTCTTCCGTCACACATGACGACTTGGTGGCCCATGAAAAAAGTCACGCTAAAGAAAGACCGTATCACTGCAaagtctgttcgaaatctttttcTTTCCGTTCTAGCTGTGCAAAACACGAACAAATTCACACCGGAGAGAAACCTTTTCGATGCAAAGTATGCTCCAAAAGTTTTACTCAAAAAGGCCACTTGAAGGCACATGAGATAGTTCATACTGGAGAAAAACCTTTCCAGTGTAAATTGTGCCCAAAATCTTATGGTCAACATTGCGGGACAAAGCGAGTGGATGAAACGAATAAGGAGACATTCCAGTGCAAATTCTGTTCAGATTCTTTTCCTACCAGATATCGCCTATCAAAACACTACAGAACTCATACCGGAAAAAAGCCGTCCAGTTTCAGAGTTCTATGCAAATTCTGCTCTAAACCTTTTCCGTCTAGAACTAAAGCTAGAACGCACGAAAGAATTCACACCGGAGAAAAACCTTTCACTTGCAAATTCTGTTCCAAATCTTTCATTCAACAAAGCCACATGACGAAACATGAAAAAACGCATACTGGAGAAGATGGATTCAACTGCAAAATCTGTTCCAAATCTTTTTCTACAAGATTTCGCCTGGAAAGACACCACAAAACTCATACCGGAAAGGAAGCTTTCCACTGCAAAGTTTGTTCACATTCTTTTATCAAACACGATGACTTGGTGGCCCATGAGAAAAGTCACACCAAAGAAAGGCCGTATCCCTGCAaaATAGCGGGACAAAGCTATGTGGCCCAAAACAAGTGGATGAAGCAGATGAGGCGACATTCCAGTGTCaagtctgttcgaaatctttttcTACCAGATCTCGTCTTGCACTCCACAAAAGAATTCATACCGGCAAACAGCTTCCGTGCAAATTCTGTTCCAAACCTTTTCGTTTCACATCCAGACTTGCAGCACACGAAAGAATCCACACCGGAGAAAAGCGTCTTCAATGTCAAGTCTGTtgcaaatattttcttcaacggGGCAGCTTGA
Protein Sequence: MLVGASARFHNCGTKRADETNKETFQCKFCSDSFPTRYRLAKHNRTHTGKKPSSFRVLCKFCSKPFPSRTKARTHERIHTGEKPFVCNFCSKSFIQQSHLVKHEKTHTGENGFNCKICSKPFSTRFRLERHYKTHTTKEAFHCKICSHSFIKHDDLVAHEKSHTKERPYHCKVYSGTQLYVDETDKKTFQCQVCSKPFPTRTKVRIHERIHTRGKSFICEICSKPLSTGFSLARHIKTHTGKEEAFHCKVCSRSFITHDDLMAHEKIHTKDGPFCCKVCSKSFLYRHRCVKHERIHTAEKRYNCKFCSKSFVQPNHVVKHEKVHTGENRFSCETCSKLFSSKSRLERHQKLTHEKCHTKESPYHCKVCSKSFPSRSVWINHEQIHTGEKPSRCKVCSKVFSRKDHLDAHAPVHTREKPFKYREAKLYRPKQVNKTNKKTFQCEICSKPLSTAFSLARHIKTHTGKEEAFHCKVCSRSFITHDDLMAHEKIHTKDGPFYCKFCSKSFPYRHRCVKHERLHTAEKRYNCKFCSKSFVQPNHVVKHEKVHTGENRFSCKICSKLFSSKFRLERHRKTHTGQEAFQCKVCSYSSVTHDDLVAHEKSHAKERPYHCKVCSKSFSFRSSCAKHEQIHTGEKPFRCKVCSKSFTQKGHLKAHEIVHTGEKPFQCKLCPKSYGQHCGTKRVDETNKETFQCKFCSDSFPTRYRLSKHYRTHTGKKPSSFRVLCKFCSKPFPSRTKARTHERIHTGEKPFTCKFCSKSFIQQSHMTKHEKTHTGEDGFNCKICSKSFSTRFRLERHHKTHTGKEAFHCKVCSHSFIKHDDLVAHEKSHTKERPYPCKIAGQSYVAQNKWMKQMRRHSSVKSVRNLFLPDLVLHSTKEFIPANSFRANSVPNLFVSHPDLQHTKESTPEKSVFNVKSVANIFFNGAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -