Came048468.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293418.1:1204920-1212262[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0013 0.23 13.9 1.1 1 23 9 31 9 31 0.98 2 20 1.7e-06 0.00029 23.1 1.1 1 23 37 59 37 59 0.99 3 20 0.00015 0.027 16.9 6.5 1 23 65 87 65 87 0.98 4 20 0.023 4 10.0 0.1 2 23 94 115 94 115 0.97 5 20 3.4e-05 0.0058 18.9 1.0 1 23 121 143 121 143 0.99 6 20 5.4e-07 9.4e-05 24.6 0.6 1 23 149 171 149 171 0.99 7 20 6.3e-07 0.00011 24.4 0.3 1 23 177 199 177 199 0.98 8 20 0.00061 0.11 15.0 1.7 1 23 205 227 205 227 0.99 9 20 6.7e-05 0.012 18.0 1.9 1 23 233 255 233 255 0.98 10 20 5.1e-05 0.0087 18.4 1.6 1 23 261 283 261 283 0.97 11 20 0.3 51 6.5 1.6 1 23 326 348 326 348 0.87 12 20 0.00025 0.044 16.2 1.6 1 23 354 376 354 376 0.97 13 20 0.0012 0.21 14.1 2.1 1 23 406 428 406 428 0.98 14 20 0.00076 0.13 14.7 1.0 2 23 435 456 435 456 0.92 15 20 0.00095 0.16 14.4 2.0 1 23 462 484 462 484 0.93 16 20 0.059 10 8.7 1.1 1 14 490 503 490 507 0.85 17 20 5.1e-05 0.0088 18.4 5.7 1 23 538 560 538 560 0.98 18 20 4.2e-05 0.0073 18.6 0.4 2 23 586 607 586 607 0.97 19 20 0.011 1.9 11.0 0.5 1 23 613 635 613 635 0.97 20 20 0.0029 0.49 12.9 0.9 1 21 641 661 641 662 0.96
Sequence Information
- Coding Sequence
- ATGGTTCATACAGGAGAAAAACCGTTCAAATGCAGCGAGTGTTCGAAGTCGTTTCCTGCTAAATACATACTGCTGTCGCACCAAAGGAATCATACGGGAGAGAAACCTTTCCAGTGTGAAGTATGTTCTAAAGGTTATACTCGAAAGTATCAGCTTGAACTACATCAACGGATTCATACAGGAGAGAAGCCGTTCCAGTGCACATTCTGTTCTAAATCTTTCAACCACCAAAGAAGCTTCGAGACCCACCAAAGGTTGCACGATGTGAAAAACCCTAACACTTGTCAAGTTTGCTTGAAACTTTTCCCCGACAGCTATGCCTTGGCGGTACACTCGAGGCTCCACACAGGGGAAAAGCCGTTCCAGTGCCGATTCTGCCCCAAATCTTTCAACTATCGCGGCGGTTTGATGGCGCACGAGAAAACCCACAGCGAAGAGAGCCCGTATAAATGCGAGGTTTGTCCAAAATCTTTCTATCGCCGGGCCGATTTGACGACGCACGAGAGAGTACACAGCGGAGAAAGGCCGTACGAGTGTAAAGTCTGCCCTAAGACTTTCATCCGCCGCGGCGACTTGACCACGCACGAGAGAATCCATAGCGGGAAAAGGCTGTACGAATGCGACATATGTTCGAAGTATTTCAGTAAAATGTTCGATCTCGGTAGGCACAAGCAAACCCACTCtgaggaaaaattattccagtgCGGGGTCTGTTCGAGATCTTTCGCTACACATTCATATTTCGTTATTCACCAGAAGATTCACACGGGCGAAAGGCCGTTCGCGTGCAAATCGTGTCCGAAGTCGTTTCTTCGAAAGTGGAGTCTGAAGAAGCATATGAAAATCCACGAGAGGAAAGAAGCAGCACGCAGATTCAAAAGAAGACTGCAGACGACTGAAGCTAGTTTGTCGACTGACGGTGTTACCAACGACTCTTCCTCAAAGCTAGGGGTGAATCATAACAAAAAGAAGCCCCATCGGTGCAAATTCTGCTCGAAAACTTTCGCATGGCGCTCCCGATTGGATATCCACGAGATGGCTCACACGGGAGAGAAACCATTTCAGTGCGACGTGTGTTCGAAGTCGTTTCATTCTAAGTATTTATTGGCGTTACACGAAATCAGCCATACGGGCGATAAACCTTTCCAGTGCGCGATCTGTTCGAAAGGAGCCAAGAGAATACCAACTAGTGAAATTCCTGCGGGAAAGAAACCGTTTCAGTGCACAGTTTGTTTAAAATCTTTCGTTCACTTTGGAAGATTGGAGGCCCACAAGAGGTTACATGACGTGAACATACCAAATACTTGTCCAGTTTGTCAGGAGTCGTTCCCCGACAGTTGTTCCTTGAAGAAACACTCGGGGATTCACGCAGGAGAAAAACCGTTTCAGTGCCTACGCTGCTCCAAGTCTTTCTCCCGCCGCAGCCGCTTGATCACGCACGATAGAATCCACACCGGAGAGAGGCCGTATAAATGCGAAGTTTGCTCGAAATCGTTCTTCAGGAGAGGATTAAAGAGGAGGTTACAAACGAAGGAAGCTGGTGGGACGATAGACGAAGTTACCAACGAAAAATCTTGCAAGATAAAAGAGATCCATAATAATGAAAAGCCCCATCGCTGTAATTTCTGCTCGAAAACGTTCTCGAAGCGATCCAAACTGAACATTCATCAATTGACGCATACGAGAGAAAAACCTTTCCAGTGCAACCTCCAAAGCTGGGTCTCCAAGAGTCTGCACGACGTCAAAAACCCGAATACTTGTCAAATTTGTTCGAAAGCTTTCACCGACAGCAAGTCCTTGGCGGTACACTCGAGAGTACACACGGGAGAAAAGCCGTTCCAGTGCCGGTACTGCTCCAAATTTATCACTTATCGCGGCGGTTTGATTGCACACGAGGAGAGACATAGCGGAGAAAGGCGGTATAAATGCGAAGTCTGTTCGAGGTATTTCTTCAGCCGGAACGACTTGACCGTGCACGAGAGATACAGAGCGGGGAAAGGCCGCATGAATGCAAAGTCTGCTCCAAAACTTTCATCCGCCGTGGCAACTTGA
- Protein Sequence
- MVHTGEKPFKCSECSKSFPAKYILLSHQRNHTGEKPFQCEVCSKGYTRKYQLELHQRIHTGEKPFQCTFCSKSFNHQRSFETHQRLHDVKNPNTCQVCLKLFPDSYALAVHSRLHTGEKPFQCRFCPKSFNYRGGLMAHEKTHSEESPYKCEVCPKSFYRRADLTTHERVHSGERPYECKVCPKTFIRRGDLTTHERIHSGKRLYECDICSKYFSKMFDLGRHKQTHSEEKLFQCGVCSRSFATHSYFVIHQKIHTGERPFACKSCPKSFLRKWSLKKHMKIHERKEAARRFKRRLQTTEASLSTDGVTNDSSSKLGVNHNKKKPHRCKFCSKTFAWRSRLDIHEMAHTGEKPFQCDVCSKSFHSKYLLALHEISHTGDKPFQCAICSKGAKRIPTSEIPAGKKPFQCTVCLKSFVHFGRLEAHKRLHDVNIPNTCPVCQESFPDSCSLKKHSGIHAGEKPFQCLRCSKSFSRRSRLITHDRIHTGERPYKCEVCSKSFFRRGLKRRLQTKEAGGTIDEVTNEKSCKIKEIHNNEKPHRCNFCSKTFSKRSKLNIHQLTHTREKPFQCNLQSWVSKSLHDVKNPNTCQICSKAFTDSKSLAVHSRVHTGEKPFQCRYCSKFITYRGGLIAHEERHSGERRYKCEVCSRYFFSRNDLTVHERYRAGKGRMNAKSAPKLSSAVAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -