Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293418.1:1472553-1479020[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 7.2e-05 0.012 17.9 1.3 1 23 116 138 116 138 0.99

2 22 8.3e-05 0.014 17.7 2.1 1 23 144 166 144 166 0.99

3 22 0.0013 0.22 14.0 4.3 1 23 172 195 172 195 0.95

4 22 0.0021 0.37 13.3 4.0 1 23 205 228 205 229 0.94

5 22 0.0034 0.6 12.6 7.8 1 23 233 255 233 255 0.98

6 22 0.00095 0.16 14.4 2.0 1 23 270 292 270 292 0.92

7 22 5.6e-06 0.00096 21.4 2.3 1 23 296 318 296 318 0.99

8 22 0.00083 0.14 14.6 6.9 2 23 325 346 324 346 0.96

9 22 0.025 4.4 9.9 0.2 3 23 354 374 353 374 0.98

10 22 3.5e-05 0.006 18.9 2.2 1 23 379 401 379 401 0.94

11 22 0.00011 0.019 17.4 1.8 1 23 406 428 406 428 0.97

12 22 2.8 4.8e+02 3.5 4.8 2 23 475 496 475 496 0.93

13 22 0.017 2.9 10.4 0.9 2 23 503 522 502 522 0.94

14 22 0.0067 1.2 11.7 4.5 1 23 528 550 528 550 0.98

15 22 0.0012 0.2 14.1 1.5 1 23 556 578 556 578 0.98

16 22 1e-05 0.0018 20.6 0.6 1 23 584 606 584 606 0.99

17 22 0.00052 0.09 15.2 0.3 1 21 612 632 612 633 0.95

18 22 0.0058 1 11.9 1.5 2 23 641 662 640 662 0.97

19 22 9.4e-05 0.016 17.5 0.7 1 23 671 693 671 693 0.96

20 22 1.9e-06 0.00033 22.9 1.6 1 23 699 721 699 721 0.98

21 22 0.0001 0.018 17.4 0.6 1 23 727 749 727 749 0.98

22 22 4.7e-05 0.0081 18.5 4.0 1 23 755 778 755 778 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	7.2e-05	0.012	17.9	1.3	1	23	116	138	116	138	0.99
2	22	8.3e-05	0.014	17.7	2.1	1	23	144	166	144	166	0.99
3	22	0.0013	0.22	14.0	4.3	1	23	172	195	172	195	0.95
4	22	0.0021	0.37	13.3	4.0	1	23	205	228	205	229	0.94
5	22	0.0034	0.6	12.6	7.8	1	23	233	255	233	255	0.98
6	22	0.00095	0.16	14.4	2.0	1	23	270	292	270	292	0.92
7	22	5.6e-06	0.00096	21.4	2.3	1	23	296	318	296	318	0.99
8	22	0.00083	0.14	14.6	6.9	2	23	325	346	324	346	0.96
9	22	0.025	4.4	9.9	0.2	3	23	354	374	353	374	0.98
10	22	3.5e-05	0.006	18.9	2.2	1	23	379	401	379	401	0.94
11	22	0.00011	0.019	17.4	1.8	1	23	406	428	406	428	0.97
12	22	2.8	4.8e+02	3.5	4.8	2	23	475	496	475	496	0.93
13	22	0.017	2.9	10.4	0.9	2	23	503	522	502	522	0.94
14	22	0.0067	1.2	11.7	4.5	1	23	528	550	528	550	0.98
15	22	0.0012	0.2	14.1	1.5	1	23	556	578	556	578	0.98
16	22	1e-05	0.0018	20.6	0.6	1	23	584	606	584	606	0.99
17	22	0.00052	0.09	15.2	0.3	1	21	612	632	612	633	0.95
18	22	0.0058	1	11.9	1.5	2	23	641	662	640	662	0.97
19	22	9.4e-05	0.016	17.5	0.7	1	23	671	693	671	693	0.96
20	22	1.9e-06	0.00033	22.9	1.6	1	23	699	721	699	721	0.98
21	22	0.0001	0.018	17.4	0.6	1	23	727	749	727	749	0.98
22	22	4.7e-05	0.0081	18.5	4.0	1	23	755	778	755	778	0.95

Sequence Information

Coding Sequence: ATGGATTCTGCAGACGATTCAAGCCCCTTTTTGATGAGCCATATCAAATATGAACCGCCTGAGGACTATGTAGAAACAATTATAATTGAGGTTACAAAAGATGATAAGATTGTAGACGATATCACTTCATGTTCACGCAATCCAGAAGAAAACCAACAGGATATATTTGAGGAAGATAAAGTCTTCATCAAAGAGGAATTAAAAGTTGACCAGCTCTCGGACGAATTTGGTTCGGTAAAAACTGAAATAGAATGGGATactaaaattgaaaactgtgtGGAGGTACTCGATGATGTAGATTTATTGAATCTGGAGGATAAACCTAAAGTTTCTTATAAGAACAAATATCCATGTCAAATTTGCAGAAAAAGCTTTGCTCGTACTCAAATTTTGAAGCGGCATTTGCGTACTCACACTGGTGAACGTCCCTTCAAGTGTCAGATATGCTTGAAAAGTTTTTCCCGgaaaaacattttgaacaggCACCTTCTGACCCACACAGGTGAGCGACCTTTCAAGTGTGAGATCTGTCTGAGCACCTTTTCTCGAAAGCATCATTTGAATACCCATGTCGATAGAGTTCATCGTGATTCAGACCAAATGGAGGAGAAGTTCCAATGTTTCAATTGTGGGAAgacttttttcaagaaactctCACTCATAAAGCATGTGTTCAGTGTTCACCATCAAGGTCCATACCACTGCAATCATTGCCCAAAGAAATTTATGTTGAAGCGAAACTTCCAAAAACACCTGAAACTCCATGGTGTGACACAGGTCCCCCTGAAAACCGAAGAAGAAGGGCCCTTCTTGTGCGATCTCTGCGGCAAAACATTCTCCTTGAAAAAATTTCTAGAAAGACACAAGGAATTTCACGAACAAAACTACCAATGCGAAATTTGCGGAAAGTGTTTTGGACGGTCATGGAGCATTAGAAAGCATCTACAGAAACACTTGAGAGAGCAGCACTTACAATGCAAGCTCTGCCCCAAACGTTTCCAGAAGAAGAGTCATTTCAACAATCACATGTTACACCATCAGAACCCTGAACATTCCTTGTGCGACATTTGCGGCAAATGGATTCCTACTAAAGATGGTTTCATCAGACACCGCCGATCTCACTTCAGATACAAGCACCGATGCATCGTGTGCGGGAAGAAGTATGCGCGGAAGGATCTCTTGGAGAGGCACATGAAACGCCACAAACCGCGCCCTTTCAAATGTTCCCTATGCCCCTTGTCTTTCAGCCAGAAAAATGACCTGATCAGCCATAAGAAGTTCCACGAGGAAAAAGATAGATCGGGGATCACAGCGTTGATTTCTGCAGATCCGCCCACTGAACAGGTTGAATCAAGGATCGATGCTGTAAGTAAAGCTGATCCATTAGTTAAAACTGCTAAAACGGACTCGAAGCCGGAGAATCGTTGCACCGTTTGTCTCAGAGAGTTTTGGTGTAACAGCCACTTGCTCAACCACATGCGCTCCCACTCCAGTGAAGCCACGCTCGAGTGCCCGATATGCTTCAAAAAACTGAAGACGAATCTGGAACGCCACATGAAAATCCACTCGGACGAGAGGCCTTTCGAATGCCACGTCTGCCACCAGCGCTTCCGCTTGAAAGAGGTGATGACGGTCCATCTGAAGACGCACTCGGTAGAGCCGGCTTTCACCTGCTCGGTGTGCTCCAGCGGGTTTTTCTCGAGCCGATCGCTCGTCCGTCACATGAAAAACCACACCGACGGATATCCTTTCCGATGCAAGATCTGCGACAAGAACTTCTACGTGATGTCGCTGCTGCTGGCGCATCAGCGGGTGCACACCGGCGAAAAGCCGTTCAAGTGCGACGTGTGCGGGAAGGGGTTTATGGAAAAAGGCAAGTTGAAGGATCACGTGAAGAAAAACCCCGAGAAGAAGTCCGTCTCCTGCCCCAAATGTCCTAGTCGGTTTTGTTTCGAGAGGGCTCTCGTCACTCATTTGAAAACCCACGGAGACGTCGACATTCGCCGACGTCACGCGTGCGCCGTGTGCGACCTGACGTTCCAGAAGAAGTACGGCTTGACGGTGCACATGAGAGTACACACGGGAGATCGGCCCTATCAGTGCTCGGTCTGCGACAAGACGTTCCAAAGGAAGTATTTGTTGACGGTGCACACGAGAGGACATACGGGAGATCGGCGTTTTCAGTGCTCGGTGTGCTTGGAGCGATTCACGACCAACGGGCTCTTGAAGAATCACGAGAAAATCCACACCAATGAGCGCCCATTTTTGTGCCATCTTTGCACCAAGAGTTTCCGAAGGAATGCCCATCTAACCGGTCATATAAAAATGGTTCATGCAGACGGGAAGCTGTTAAAGAAAAGTAAAGGTGCCTTTACCGAGGAGGCTGCTTCAGAGAAAGTTGGATGTAATAAAAAAAGGGTTCATGAAGAGGGGATGCTGTTAAAGAAAAGTAAAGGGGCCGTTACTGAAAAGGCTGCGACAGAGAAAGTTGGACTTGCGAAGAAAAGCGTTGTCATCAAGGTGATTCGGAGGAAGAAGCTCCAGAATCTTGGTAGTGCCGAAATTCCTTGA
Protein Sequence: MDSADDSSPFLMSHIKYEPPEDYVETIIIEVTKDDKIVDDITSCSRNPEENQQDIFEEDKVFIKEELKVDQLSDEFGSVKTEIEWDTKIENCVEVLDDVDLLNLEDKPKVSYKNKYPCQICRKSFARTQILKRHLRTHTGERPFKCQICLKSFSRKNILNRHLLTHTGERPFKCEICLSTFSRKHHLNTHVDRVHRDSDQMEEKFQCFNCGKTFFKKLSLIKHVFSVHHQGPYHCNHCPKKFMLKRNFQKHLKLHGVTQVPLKTEEEGPFLCDLCGKTFSLKKFLERHKEFHEQNYQCEICGKCFGRSWSIRKHLQKHLREQHLQCKLCPKRFQKKSHFNNHMLHHQNPEHSLCDICGKWIPTKDGFIRHRRSHFRYKHRCIVCGKKYARKDLLERHMKRHKPRPFKCSLCPLSFSQKNDLISHKKFHEEKDRSGITALISADPPTEQVESRIDAVSKADPLVKTAKTDSKPENRCTVCLREFWCNSHLLNHMRSHSSEATLECPICFKKLKTNLERHMKIHSDERPFECHVCHQRFRLKEVMTVHLKTHSVEPAFTCSVCSSGFFSSRSLVRHMKNHTDGYPFRCKICDKNFYVMSLLLAHQRVHTGEKPFKCDVCGKGFMEKGKLKDHVKKNPEKKSVSCPKCPSRFCFERALVTHLKTHGDVDIRRRHACAVCDLTFQKKYGLTVHMRVHTGDRPYQCSVCDKTFQRKYLLTVHTRGHTGDRRFQCSVCLERFTTNGLLKNHEKIHTNERPFLCHLCTKSFRRNAHLTGHIKMVHADGKLLKKSKGAFTEEAASEKVGCNKKRVHEEGMLLKKSKGAVTEKAATEKVGLAKKSVVIKVIRRKKLQNLGSAEIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -