Came014764.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293412.1:1064488-1070377[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.009 1.5 11.3 0.3 7 23 175 191 170 191 0.91 2 20 0.00011 0.019 17.3 3.7 1 23 197 219 197 219 0.97 3 20 2e-06 0.00034 22.8 1.6 1 23 225 247 225 247 0.98 4 20 0.00013 0.023 17.1 3.3 1 23 253 275 253 275 0.97 5 20 8.2e-07 0.00014 24.0 1.5 1 21 281 301 281 302 0.95 6 20 0.0021 0.37 13.3 3.9 1 23 309 331 309 331 0.97 7 20 0.00016 0.028 16.8 3.7 1 23 337 359 337 359 0.94 8 20 0.0063 1.1 11.8 1.0 1 21 365 385 365 386 0.95 9 20 0.0027 0.46 13.0 0.3 6 23 546 563 544 563 0.95 10 20 5.1e-05 0.0089 18.4 2.5 1 23 569 591 569 591 0.97 11 20 0.00031 0.053 15.9 3.6 1 23 597 619 597 619 0.97 12 20 2.4e-05 0.0042 19.4 5.0 1 23 625 647 625 647 0.98 13 20 1.3e-05 0.0022 20.3 7.1 1 23 653 675 653 675 0.99 14 20 0.00025 0.042 16.2 4.3 1 23 681 703 681 703 0.97 15 20 1.2e-05 0.0021 20.3 3.7 1 23 709 731 709 731 0.98 16 20 0.00026 0.045 16.1 2.3 1 23 737 759 737 759 0.97 17 20 1.6e-07 2.8e-05 26.2 0.6 1 23 765 787 765 787 0.98 18 20 0.00091 0.16 14.4 5.2 1 23 793 815 793 815 0.98 19 20 2.9e-05 0.005 19.1 4.8 1 23 821 843 821 843 0.98 20 20 0.0062 1.1 11.8 6.9 1 23 849 871 849 871 0.98
Sequence Information
- Coding Sequence
- ATGCAGCTGTTTCATAATATTACAAATGTTgtgaaAGCTGAAGACGTCTTCTCTAATAAGAATAGCATCTGCAACAAATGCATAAAAGAACTAGAAACCATATCATTATTCGTTAGTGTATCGTTGTCTCATGAAATCAAACTTAAAAATACCGTTGAAAGATATGAGTCTCAGGAAACTGAAAATTGTCTAGAAGGAAATTCATTTGATATAGGAGAcgtgaataaattaaaaaaggATGATGATTTTGATGAAAAGGCATACAGTTATGAAAGCAAGAGTTTACATACAATTATCAATATAAAGGAAGAAAATGGTGACACTCCTGAAGCTTCTATTGAGCAAATCAACCGAACTGGAATGAACATATGTAGTGAAAGTTACTCTGAAGAAAATCCATTTGACCGTGATCCATGCAAAGATGAGTTCACTAATGGGACCCATATGAAAAATCTGTTGAAAGGGTTAGATATTAATCTTGAAATCCAGTCTGAAACAAATCGATTGAAATGTGACAGTTTTGATGAAAGTTTCACCAATCAGAAGAGTTTGAAAAGACATATGCTCGCTCACACTAAAGATAAACCATTCAAATGTGACTGCTGCGAacgaagtttcagtaataaaagtAATATGCAACGGCATATGGTCATTCACACTGGAGAAAAGCAATTCAAATGTGATATGTGCGGAAGGAGATTTTCTGTCAAGCAAAATCTGAAAACACATTTACTCTCTCACTCTGGAGAAAAGCAATTCAAATGTGATTGCTGCTTGAAAAGTTTCAATCAGAAGGGTAATTTGCAAAAGCACATGATCGTTCACAGTGGAGAGAAGCAATTCAAATGTAATTTCTGCGGAAAAAGATTTTCTCGGAAGCAAAATCTGAAGGCACATTTACTTTCTTACGCTGGAGAAAAGCCATTCAAATGTGATTGCTGCCTGAAAAGTTTCAATCAGAAGGGGAATTTGCAAAAGCACAAGATCGTTCACAGTGGAGAGAAGCGATTCATATGTGATTTCTGCGGAAGAAGGTTTTCTCAGAAGAAATATCTGAAGACACATTTATTCTTTCACACTAGAGAAAAGCCATACAAATGTGATTGCTGCTTGGAAAGTTTTGCTCAGAAGGGGAATTTGCAAAAGCACgtgaaAGCTGAAGACGTCTTCTCTGATAAGAATAGCATCTGCAACAAATGCATAAAAGAACTAGAAACCATATCATTATTCGTTAGTGTATCGTTGTCTCATGAAATCAAACTTAAAAATACCGTTGAAAGATATGAGTCTCAGGAAACTGAAAATTGTCTAGAAGGAAATTCATTTGATATAGGAGAcgtgaataaattaaaaaaggATGATGATTTTGATGAAAAGCCATACAGTTATGAAATCAACAGTTTACATACCATTATTGATATAAAGGAAGAAATTGTCGACACTGAAGCTTGTATTGAGCAAGTTAAccgaaatgaaataaacattttcagtgaaagctgctTTGAAGAAAATCCATTTGACCGTGATTCATGCAATGATGAGTTCACTAATGGGACCCATGTGGAAAATCTGTTGAAAGGATTAGATATTAATCTTGAAATCCAGTCTGGAACAAATCGATTCAAATATGACAGTTGTGATGAAAATTTCACCAAGCAGCAGAGTTTAAAAAGACATATGCTCGCTCACACTAAAGAAAAGCCATTCAAATGCGAATATTgctttaaaaaatttgtttataagaGCTATTTGCAACAGCATGAGATTATTCATACTGGAGAAAAGCCATTCAAATGTGATTGCTGCTTGAAAAGTTTCTATCAGAAGGGTAATTTGCAAAAGCACATGATCATTCACACTGGAGAGAAGCCATTCACATGTGATATTTGCAGAAAAAGTTTCACTCAAAAGCATAGTTTGAAAACACATTCACTCACCCACACTGGACAAAAGCCATTCAAATGTGATATctgcaaaaaatgtttctgtgataaaaaatatttgcgaGCACATTTGCTCACTCACGCTaaagaaaaacaattcaaatgTAACTGCTGTGAACGAAGTTTCAATAATAAAAGTAATATGCAACGGCATATGGTCATTCACACTGGAGAAAAGCAATTCAAATGTGATAACTGCGGAAGGAGATTTTCTGTCAAGCAACATCTGAAGACGCATTTACTTTCTCACACTGGAGAAAAGCCATTCAAATGTGATTGCTGCTTAAAAAGTTTCGCTCAGAAGGGGAGTTTGCAAAAGCACATGATCGTTCACAGTGGAGAGAAGCAATTCGAATGTAATTTGTGCGGGAAAGGATTTTCTCGGAAGCAAAATCTGAAGGCACATTTACTCTCTCACACTGGAGAAAAGCCATACAAATGTGATTGCTGCTTGAAAAGTTTCACTCAGAAGGTTCATTTGCAAACGCACATGATCGTCCACAGTGGAGAGAAGCAATTCAAATGTAATTTCTGCAAAAGAAGTTTTACTAGAAAGCAGACTTTGAAAACACATTTAGTCACTCACACTGGAGAAAAGCCGTTCAAATGTGATTGCTgcgaaaaatgtttttatgataAAAGATATCTGCGAGCACATTTGCTCACTCACGCTAAagaaaaaccattcaaaatGTAA
- Protein Sequence
- MQLFHNITNVVKAEDVFSNKNSICNKCIKELETISLFVSVSLSHEIKLKNTVERYESQETENCLEGNSFDIGDVNKLKKDDDFDEKAYSYESKSLHTIINIKEENGDTPEASIEQINRTGMNICSESYSEENPFDRDPCKDEFTNGTHMKNLLKGLDINLEIQSETNRLKCDSFDESFTNQKSLKRHMLAHTKDKPFKCDCCERSFSNKSNMQRHMVIHTGEKQFKCDMCGRRFSVKQNLKTHLLSHSGEKQFKCDCCLKSFNQKGNLQKHMIVHSGEKQFKCNFCGKRFSRKQNLKAHLLSYAGEKPFKCDCCLKSFNQKGNLQKHKIVHSGEKRFICDFCGRRFSQKKYLKTHLFFHTREKPYKCDCCLESFAQKGNLQKHVKAEDVFSDKNSICNKCIKELETISLFVSVSLSHEIKLKNTVERYESQETENCLEGNSFDIGDVNKLKKDDDFDEKPYSYEINSLHTIIDIKEEIVDTEACIEQVNRNEINIFSESCFEENPFDRDSCNDEFTNGTHVENLLKGLDINLEIQSGTNRFKYDSCDENFTKQQSLKRHMLAHTKEKPFKCEYCFKKFVYKSYLQQHEIIHTGEKPFKCDCCLKSFYQKGNLQKHMIIHTGEKPFTCDICRKSFTQKHSLKTHSLTHTGQKPFKCDICKKCFCDKKYLRAHLLTHAKEKQFKCNCCERSFNNKSNMQRHMVIHTGEKQFKCDNCGRRFSVKQHLKTHLLSHTGEKPFKCDCCLKSFAQKGSLQKHMIVHSGEKQFECNLCGKGFSRKQNLKAHLLSHTGEKPYKCDCCLKSFTQKVHLQTHMIVHSGEKQFKCNFCKRSFTRKQTLKTHLVTHTGEKPFKCDCCEKCFYDKRYLRAHLLTHAKEKPFKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -