Came014762.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293412.1:1054974-1058104[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00012 0.021 17.2 5.9 1 23 271 293 271 293 0.99 2 17 9.9e-07 0.00017 23.8 2.5 1 23 299 321 299 321 0.98 3 17 1e-06 0.00018 23.7 2.7 1 23 325 347 325 347 0.98 4 17 0.0017 0.3 13.6 9.5 1 23 353 375 353 375 0.98 5 17 3.9e-06 0.00068 21.9 3.6 1 23 381 403 381 403 0.93 6 17 5.7e-07 9.8e-05 24.5 1.8 1 23 409 431 409 431 0.97 7 17 0.057 9.8 8.8 0.4 5 23 431 449 430 449 0.95 8 17 4.4e-05 0.0076 18.6 1.1 1 23 455 477 455 477 0.98 9 17 0.0068 1.2 11.7 7.4 1 23 483 505 483 505 0.96 10 17 6.4e-07 0.00011 24.3 4.6 1 23 511 533 511 533 0.97 11 17 2.2e-06 0.00038 22.7 2.4 1 23 555 577 555 577 0.95 12 17 8e-07 0.00014 24.0 6.9 1 23 583 605 583 605 0.98 13 17 4e-05 0.0069 18.7 2.4 1 22 636 657 636 657 0.94 14 17 2e-05 0.0035 19.6 2.9 1 23 664 686 664 686 0.98 15 17 0.0071 1.2 11.6 9.6 1 23 692 714 692 714 0.97 16 17 0.00012 0.021 17.2 0.8 1 23 720 742 720 742 0.98 17 17 7.1e-06 0.0012 21.1 2.7 1 23 748 770 748 770 0.98
Sequence Information
- Coding Sequence
- atggaaGGGTGTGAGAATGAAGAGTTTGATATCAAAGATTTCCCCTTGATTTGCCGAATATGTTTGAATCGAAGTGATTCGCAATTGTTCCAGGTGGAAGACCATTTGCTGGATCTATACCTAACCATTACCAAGATTGAAATACGTACTACAGACTTCCCGAGAAATATATGCAGTGTTTGCATCAATAGACTGAAATTTATAGCGTTGTTTATTGACATGTCCAAGTTTAATAACGCAAGGTCTGGGGAATACAGCATGTTGAAAAATGGACAAGGACATGTAAAAATGGTTGAATGTAGAACATCTCCAAAAAATGAAACAACTGAAGAATATGAAGAGGATATACAATTTATCAAAGGATTTGAAATTTGTCGAATATGTTCTTCAACAAGTAACTTGACACCATTTGAAGAAAAGGCACATTTGCTGCAGCTTTTTCAAGATGTTACACACATCGATGTGAAAGCTGACACTAACTTCCCCAGTAGAAATAGCATCTGTAACAAATGCATAAACAAACTAGAAAATATATCATCATTTATCAGTGTGTCATTGCGTAACAATATGAAACTCGAAAATATCATTGTTAAAGCTGAAAATTGTTTAGAAGAAAATGCAATTGATATCAGTTTTTCCGAGTGTTATGATgtgaaatgtgaaaatattctaGATGAAAATCAGGTGAAAATGGAGGCTGATTTAGATGAAGATGCATGCCTTTATGAAAGCAATTCACTTCCAAAAGTTGATATAAAGGAAGAAATTGTTGACTCTGAAGTATCCACAAAAAGCTTCGTCAAAAAGCCATTCAAATGTGATCGCTGTGAGAAAAGTTTCAATCACATAAGCAATATGAGAAAGCATTTCCGAACTCACACTGGGCAAAAGCCATTCAAATGTGACGGCTGCGAAAGAAGGTTCAGCCAGAAAAGCAATTTAATGAAGCATTTCCTAACCCACGTTCACCCATTCAAGTGTGATTTCTGCGAGAAGAGTTTCAAGAGAAAAAGCTACTTGCAAAACCATTTGGAAATTCACGCTGAAGAGAGACCTTTTAAATGTGACAGCTGCGAAAAAACATTCACTCATCACCATAACTTTAAAAACCATTGGCTCACTCACACTGAGGAAAGACCATTCAGATGCGATTATTGCGACAAGAGTTTCAAGAGGAAAAGTCATCTGCAAGGTCATTCGCTAGGTCACACTGGAGAGAAGCCATTCAAATGTGGCGGCTGCGAAAAAAGGTTCAGTCAGAAAAGCAATTTGCGAAAGCATTTCCTCGTCCACTGCAAAAAGATTTTGCAGAGGAAAAGTCAACTGCAAAACCATTTGGTGATTCACACCGATGAGAGGCCTTTCAAATGTGACAGCTGCGCAAAAACCTTCGCGCAAAACGATTACTTTCAGCGCCATTTGCTCGTTCACACTGAAGAAAGACCATTCAAATGCGATTGCTGCGACAAGAGTTTCAAGATGAAAAGTCATCTGCGAAGCCACTCGTTAAGTCACACTGGAGAGAAGCCTTTTAAATGTGACGGCTGCGAAAAAAGTTTTACTCAAAAGCATAATTTGCAACATCATATGCTCGCACACACTGAAGAAAAACCCGATGGCAGTCATGAAAATACTTTGTTAATTCACACTGAAGAAAAGCCCTTCTTATGTGATAAATGCGGTAAAAGTTTCGTTCAAAAACACAGTTTGCTAAATCACATGCTTAGTCATGCTGGAGAAAAGCCGTTCAAATGCGACGGTTGCCAAAAAACTTTCTCCCAAAAGCATAATTTGCAGCATCATATGCTCAAACATACTGAAGAAAGACCCGATTGCAGGGGGGAAAGTTGCAGTTACGAAAATAATTTACAAAGGTTTCTGCTAACTCACACTGGAGAAAAACCATTCACGTGTGATTGCTGCGGGAAAAGTTTCAAAAGTAAAGGTAACTTGAATAAACATTTGCTAACTCGCACTGGAGAAAAGCCGTTTAAGTGCGATACCTGCGAAAAAAGTTTCGCTCTAAAACACAGTTTGCAATCGCATATGCTCTCTCATACTGGAGAAAAGTCATTCAAATGCGAGTGCTGCGAGAAGAGTTTCAGTCACAAATGTAATTTGACGCGGCATAGGCTCATTCACACTGGAGAAAGGCCATTCCAATGTGATAGCTGCGAAAACAGTTTCAGGGAAAGGTCGGATTTGCAACGGCACGCACTTACTCATACTGGAGAAAAGCCTTTCAAATGTTTTAGCTGCGAGAAAAGTTTCAATAATAAGGGTAATTTAAAAAAGCATTTGGTAACTCACGAAGGAGAAAAGCCAGTTGAATGTGAATGA
- Protein Sequence
- MEGCENEEFDIKDFPLICRICLNRSDSQLFQVEDHLLDLYLTITKIEIRTTDFPRNICSVCINRLKFIALFIDMSKFNNARSGEYSMLKNGQGHVKMVECRTSPKNETTEEYEEDIQFIKGFEICRICSSTSNLTPFEEKAHLLQLFQDVTHIDVKADTNFPSRNSICNKCINKLENISSFISVSLRNNMKLENIIVKAENCLEENAIDISFSECYDVKCENILDENQVKMEADLDEDACLYESNSLPKVDIKEEIVDSEVSTKSFVKKPFKCDRCEKSFNHISNMRKHFRTHTGQKPFKCDGCERRFSQKSNLMKHFLTHVHPFKCDFCEKSFKRKSYLQNHLEIHAEERPFKCDSCEKTFTHHHNFKNHWLTHTEERPFRCDYCDKSFKRKSHLQGHSLGHTGEKPFKCGGCEKRFSQKSNLRKHFLVHCKKILQRKSQLQNHLVIHTDERPFKCDSCAKTFAQNDYFQRHLLVHTEERPFKCDCCDKSFKMKSHLRSHSLSHTGEKPFKCDGCEKSFTQKHNLQHHMLAHTEEKPDGSHENTLLIHTEEKPFLCDKCGKSFVQKHSLLNHMLSHAGEKPFKCDGCQKTFSQKHNLQHHMLKHTEERPDCRGESCSYENNLQRFLLTHTGEKPFTCDCCGKSFKSKGNLNKHLLTRTGEKPFKCDTCEKSFALKHSLQSHMLSHTGEKSFKCECCEKSFSHKCNLTRHRLIHTGERPFQCDSCENSFRERSDLQRHALTHTGEKPFKCFSCEKSFNNKGNLKKHLVTHEGEKPVECE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -