Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293412.1:100374458-100383891[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.0061 1 11.8 3.3 1 23 289 311 289 311 0.95

2 28 3.8 6.5e+02 3.0 8.8 2 23 318 339 317 339 0.95

3 28 8.5e-05 0.015 17.7 1.2 1 23 345 367 345 367 0.98

4 28 2.4e-06 0.00042 22.5 1.2 1 23 373 395 373 395 0.97

5 28 0.014 2.5 10.7 6.4 1 23 401 423 401 423 0.97

6 28 4.7e-06 0.00081 21.6 6.9 1 23 429 451 429 451 0.99

7 28 0.0016 0.28 13.6 4.3 1 23 457 479 457 479 0.97

8 28 4.8e-06 0.00083 21.6 3.2 1 23 485 507 485 507 0.98

9 28 6.4e-06 0.0011 21.2 2.4 1 23 513 535 513 535 0.99

10 28 7.6e-05 0.013 17.8 3.9 1 23 541 563 541 563 0.98

11 28 0.06 10 8.7 7.9 1 23 569 591 569 591 0.98

12 28 5.7e-05 0.0099 18.2 5.3 1 23 597 619 597 619 0.98

13 28 0.062 11 8.7 0.6 1 23 862 884 862 884 0.89

14 28 2.6e-05 0.0045 19.3 7.5 1 23 891 913 891 913 0.98

15 28 1.6e-06 0.00027 23.1 2.5 1 23 919 941 919 941 0.99

16 28 2.5e-06 0.00043 22.5 1.4 1 23 947 969 947 969 0.98

17 28 0.015 2.5 10.6 4.1 1 23 975 997 975 997 0.97

18 28 4.8e-06 0.00083 21.6 3.3 1 23 1003 1025 1003 1025 0.98

19 28 7.8 1.4e+03 2.0 0.2 8 23 1039 1054 1033 1054 0.87

20 28 0.00024 0.041 16.3 3.7 1 23 1060 1082 1060 1082 0.98

21 28 0.00023 0.04 16.3 0.9 1 23 1088 1110 1088 1110 0.97

22 28 0.0018 0.31 13.5 7.0 1 23 1116 1138 1116 1138 0.96

23 28 3.1e-06 0.00053 22.2 2.2 1 23 1144 1166 1144 1166 0.98

24 28 0.00045 0.078 15.4 2.9 1 23 1172 1194 1172 1194 0.98

25 28 0.04 6.9 9.3 6.5 1 23 1200 1222 1200 1222 0.98

26 28 1.2e-05 0.002 20.4 0.6 1 23 1228 1250 1228 1250 0.99

27 28 3.5e-05 0.006 18.9 4.8 1 23 1256 1278 1256 1278 0.99

28 28 0.014 2.4 10.7 2.3 1 23 1284 1306 1284 1306 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.0061	1	11.8	3.3	1	23	289	311	289	311	0.95
2	28	3.8	6.5e+02	3.0	8.8	2	23	318	339	317	339	0.95
3	28	8.5e-05	0.015	17.7	1.2	1	23	345	367	345	367	0.98
4	28	2.4e-06	0.00042	22.5	1.2	1	23	373	395	373	395	0.97
5	28	0.014	2.5	10.7	6.4	1	23	401	423	401	423	0.97
6	28	4.7e-06	0.00081	21.6	6.9	1	23	429	451	429	451	0.99
7	28	0.0016	0.28	13.6	4.3	1	23	457	479	457	479	0.97
8	28	4.8e-06	0.00083	21.6	3.2	1	23	485	507	485	507	0.98
9	28	6.4e-06	0.0011	21.2	2.4	1	23	513	535	513	535	0.99
10	28	7.6e-05	0.013	17.8	3.9	1	23	541	563	541	563	0.98
11	28	0.06	10	8.7	7.9	1	23	569	591	569	591	0.98
12	28	5.7e-05	0.0099	18.2	5.3	1	23	597	619	597	619	0.98
13	28	0.062	11	8.7	0.6	1	23	862	884	862	884	0.89
14	28	2.6e-05	0.0045	19.3	7.5	1	23	891	913	891	913	0.98
15	28	1.6e-06	0.00027	23.1	2.5	1	23	919	941	919	941	0.99
16	28	2.5e-06	0.00043	22.5	1.4	1	23	947	969	947	969	0.98
17	28	0.015	2.5	10.6	4.1	1	23	975	997	975	997	0.97
18	28	4.8e-06	0.00083	21.6	3.3	1	23	1003	1025	1003	1025	0.98
19	28	7.8	1.4e+03	2.0	0.2	8	23	1039	1054	1033	1054	0.87
20	28	0.00024	0.041	16.3	3.7	1	23	1060	1082	1060	1082	0.98
21	28	0.00023	0.04	16.3	0.9	1	23	1088	1110	1088	1110	0.97
22	28	0.0018	0.31	13.5	7.0	1	23	1116	1138	1116	1138	0.96
23	28	3.1e-06	0.00053	22.2	2.2	1	23	1144	1166	1144	1166	0.98
24	28	0.00045	0.078	15.4	2.9	1	23	1172	1194	1172	1194	0.98
25	28	0.04	6.9	9.3	6.5	1	23	1200	1222	1200	1222	0.98
26	28	1.2e-05	0.002	20.4	0.6	1	23	1228	1250	1228	1250	0.99
27	28	3.5e-05	0.006	18.9	4.8	1	23	1256	1278	1256	1278	0.99
28	28	0.014	2.4	10.7	2.3	1	23	1284	1306	1284	1306	0.97

Sequence Information

Coding Sequence: ATGGATTTGCTGGGGAATGGGGACTACAAGGAATCCATTATTACTTCAAAAGATTTGTCGTTTATTTGCCGAATTTGCTGTTTGAAACGAACTGATTTGAGATTGTTCcaagaagaaaattatttattggatTTATTCCATGCTATTAGAAAAACAGAGGTCGATTCAACAGcggaatttccaaaaaatgtatgCAATGGATGCATCCATGAACTAGAAAGTatatcattttttattgacCCTGCAAAGCATAATAATGATACAATATTGGAAAATATCCTTCAGCCAAAAAAAGAAACTATTGAATTTACAGATGAAATTGAAACAGGTCTGTCACAAAAATCTATaggaataattgaagaaaatggaGAAGATATAATTGTCCAGAGGTCTCAAATTTGTCAACTTTGTACGGCAGGTAATTCGTCATTTGAAGAGAGGATACATTCAGTACACCTATTTGAAAACACTACAAACATTGATGAGCAAGCTGAATTCAGCAATTCGAAAATGAATTTCATATGCAGCAAATGTAAAAACGAAttaaaaaagatttcagcattTGTCACTTCATCACTTCTCAATGATGAGCAGCTTAAGCAAGTTATTGTTAGGAAAACGACtgtgaaaactgaaaattactCAGATTCAATAGACATGAAATTATCAACAAGTCAAGAATTCAAACTTGAAAGTGTCATTGATACAAATGAAAcaatgattgaaaatatttttgaagaaacttcTTTTTATCCTGAAAGTAAGATGAAACCTGAGATTTTTGATATCAAGGAAGAAATTATTGACAGCCAAGTTGTAACTTTTACTGATGGTGAGCTGATAACAGGAAACGTGAAGAATCCATTTATATGTGACTGTTGCAAGAAAAGTTTCGCAAAGAAGTTGGATTTGCAAAAGCATTTGCTCACTCACAACGGAGAAAGATCAATCAAATGTGATTGCtgcgaaaaaaaattcttacacAAAAATCATTTAAAACAGCATATGTACACTCACACCAGAACATCATCATTTGAATGTGATATCTGTGAAAAAAATTTCCCAGGTCAGCAAAGTTTGCAACATCATAGGCTCACTCACAGTGGAAAAAAAGCATTCAAATGTAATCTCTGTGAAAAAAGTTTCTACCAAAAACCAAATTTGCAACAGCATATGCTAGCtcatattggaaaaaaatctttcaaatgttgctGCTGTGAAAAAGAATTCATACGTAAGCAAAGTTTGCAAAATCATATGATCACTCACAGTGGAGAGAAGCCATTCAAGTGTGATATGTGCGAAAAATGTTTCAGCCAAAAACATTCATTGCAAACGCATATGCTCACTCACAGTGGAGAAAACCCGTACAAATGTGATTgctgtgaaaaaaaatttacaagtaAACAAAATTTGCAGTACCATATGGTCATACACGGTGGAATAAAATCATTCGAATGTGATTATTGCGAAAAAAGCTTTTACCATAATCTAAATTTGCAGCAGCATATGCTCACTcacattggaaaaaaattattccaatgtTACTACTGCAAAAAAGAATTCATACGCAAGCAAGGTTTGCAAAATCATATGCTCACTCACAGtggagaaaaaccattcaaatgtGATAGTTGCGAAAAATGTTTCACACAGAGAAATGCTTTGCAATATCATATGCTCTCTCATACTGGTGAGAAACCATTCAAATGTGAATGCTGCGAAAAAAAATTCGCAAGTAAGCATAGTAGAAAACGGCATATGCTCACTCACagtggtgaaaaaccattcaaatgtGATAGCTGTGGGAAATGTTTAAGACAGAAAAGTCATTGGCAAAAGCACATGCTCATTCACACTGGAAAAACGAAGGTTGTCAAATATTATGTCCATTCAACTGcggaatttccaaaaaatgtatgCAATGAATGCATAAATGAACTAGAAAGTATATCATTGTTTATTGACCCTTCAAAAGGTAATAATGACGCAATATTTGGAAATAACATGCAgccaaaaaaggaaaaaattgaatacacAGACGAAATTGAAACTGGTTCTTCACAAAAATGTATAGGGATAATTGACGAAAACGGAGAGGATAAGTTTCTCCAGAGGTCTCAAATTTGTCAACTTTGCTCGGCAAGTAGTCTAATGCCGTTTGAAGAGAGGATAGATCTGTTGGGTCAGTTTGAAAACACCACCATCGCTGATGCAAAAGCCGAATTCATCGATTCAGAAAAGAATATCTGCAACAAATGCAACAACAAACTAAAAAAGATTTCATCGTTTGTCACTTCATCACTTCTTAATGTTGAGAAGCTCCATCATGCCATTGGTGGAAATACGactgtgaaaaatgaaaattattcaaatccaattgACATGGAATTAATAACGTGTCAAGAATTCAAACAGGAAGAAAGTGTTATTGATAGAAAAGAAACAATGACTGAAATTCCTTCATTTCTCGAAAGTAAGGTAATATCTGAGATTATTGATATAAAGGAAGAAATTATCGGCATCGAACTTGTGACTCCTACTGATGAGATGGACCTGATAACAGAAAgtgtgaaaaatacatttatatgtGACTGTTGTGGGCAAAGTTTTGCAAACATGTGGGATTTGCAACAACATTTGCCTACTCACTCTGCGAAAAATCGACCATTCAAATGTGGTCGCTGCGGGAAAAAATTCGTACAAAAGCATCATTTGAAACAGCATATGTTCACTCACACTAGAACATCGTCATTCCAATGTGATATCTGTGAAAAATCATTCACAGGTAAGCAAAGTTTGCAACATCATATGCTCACTCACAGcggaaaaaaatcattcaagtgTGACAGATGCGAAAAAAGTTTCTACCAGAAACCAAATTTGCAACAGCATATGCTCGTACAcgtgggaaaaaaattattcaaatgttaTTGTTGCGAAAAGCAATTTATACGTAAGCAAGGTTTGCAAATGCATATGCTCACTCATAGTGGAGAAAAACCATTCGAATGTGGTAGTTGTGAAAGATGTTTCACACAGAAGAGTGCTTTGCAATATCATATGCGCACTCACACTGAAAAAAGACGACAAGTCAATTGTGGTAGCAGCGAAGAAAAGTTCATGAGTAAGGAAAGTAGGCAACAGCATATGCTCACTCACAGTGGAGAAAAACCATTCGAATGTTATAATTGTGGGAAATGTTTCAGGCTAAAAAGTATTTTGCGAAACCACATGCTCACTCATACTGGTGAAAAGTCGTTTGAATGCGAGAGTtgcgaaaaaaaattcagattccAGATAAGTTTGCAAACGCATATGCTCGCTcacactggaacattatttttcaattgtgattGCTGTGAGAAAAAATTCACAAGTAAGCAAAATTTGCAACATCATATGCTCACTCACAGCGGAAAGAAATCATTCAAATGTGATAGTTGCGAAAAAAGTTTCTATAATAAATCCAGTTTGCAACAGCATATGGTCACTcacattggaaaaaaattattcgaatgtCCTTGCtgcgaaaaaaatttcaaacgtaAGCAAGGTTTGCAGATGCACATGCTCACCCATACTCGAGAAGAACCATTCAGATGTGACAGTTGTAAAAGATGTTTCAGACAGAGAAATGCTTTGCAATGTCATATGCTCATTCATTCGGGTGAGAAACCGTTCAAGTGTGATATCTGCGAAAAAATGTTCAGACTCAAGAGTACTTTGGCAGACCATTTGCTCACTCACAGTGGAGAAAGACCATACCAATGTGAAAGTTGTAAAAAATGTTTCAGGCAGCGAAATGCTTTGCAATATCATATGCTCACTCATACTGGTGAAAAACGATTCAAATGTGATTGGtgcgaaaaaaaattcaaaagtaagcAAGGTTCGAGATATCATATGGTCACTCACTGTGGAAAAAAACGGTTCAAATGTGGAAAAGTGTTCGAATGTGATAGCTGA
Protein Sequence: MDLLGNGDYKESIITSKDLSFICRICCLKRTDLRLFQEENYLLDLFHAIRKTEVDSTAEFPKNVCNGCIHELESISFFIDPAKHNNDTILENILQPKKETIEFTDEIETGLSQKSIGIIEENGEDIIVQRSQICQLCTAGNSSFEERIHSVHLFENTTNIDEQAEFSNSKMNFICSKCKNELKKISAFVTSSLLNDEQLKQVIVRKTTVKTENYSDSIDMKLSTSQEFKLESVIDTNETMIENIFEETSFYPESKMKPEIFDIKEEIIDSQVVTFTDGELITGNVKNPFICDCCKKSFAKKLDLQKHLLTHNGERSIKCDCCEKKFLHKNHLKQHMYTHTRTSSFECDICEKNFPGQQSLQHHRLTHSGKKAFKCNLCEKSFYQKPNLQQHMLAHIGKKSFKCCCCEKEFIRKQSLQNHMITHSGEKPFKCDMCEKCFSQKHSLQTHMLTHSGENPYKCDCCEKKFTSKQNLQYHMVIHGGIKSFECDYCEKSFYHNLNLQQHMLTHIGKKLFQCYYCKKEFIRKQGLQNHMLTHSGEKPFKCDSCEKCFTQRNALQYHMLSHTGEKPFKCECCEKKFASKHSRKRHMLTHSGEKPFKCDSCGKCLRQKSHWQKHMLIHTGKTKVVKYYVHSTAEFPKNVCNECINELESISLFIDPSKGNNDAIFGNNMQPKKEKIEYTDEIETGSSQKCIGIIDENGEDKFLQRSQICQLCSASSLMPFEERIDLLGQFENTTIADAKAEFIDSEKNICNKCNNKLKKISSFVTSSLLNVEKLHHAIGGNTTVKNENYSNPIDMELITCQEFKQEESVIDRKETMTEIPSFLESKVISEIIDIKEEIIGIELVTPTDEMDLITESVKNTFICDCCGQSFANMWDLQQHLPTHSAKNRPFKCGRCGKKFVQKHHLKQHMFTHTRTSSFQCDICEKSFTGKQSLQHHMLTHSGKKSFKCDRCEKSFYQKPNLQQHMLVHVGKKLFKCYCCEKQFIRKQGLQMHMLTHSGEKPFECGSCERCFTQKSALQYHMRTHTEKRRQVNCGSSEEKFMSKESRQQHMLTHSGEKPFECYNCGKCFRLKSILRNHMLTHTGEKSFECESCEKKFRFQISLQTHMLAHTGTLFFNCDCCEKKFTSKQNLQHHMLTHSGKKSFKCDSCEKSFYNKSSLQQHMVTHIGKKLFECPCCEKNFKRKQGLQMHMLTHTREEPFRCDSCKRCFRQRNALQCHMLIHSGEKPFKCDICEKMFRLKSTLADHLLTHSGERPYQCESCKKCFRQRNALQYHMLTHTGEKRFKCDWCEKKFKSKQGSRYHMVTHCGKKRFKCGKVFECDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -