Came007882.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysolina americana
Gene Symbol
-
Assembly
GCA_958502065.1
Location
OY293411.1:3044086-3046853[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 4.9e-06 0.00085 21.6 1.2 1 23 93 115 93 115 0.98
2 19 0.01 1.7 11.1 1.3 1 23 121 143 121 143 0.96
3 19 2.9e-06 0.0005 22.3 3.8 1 23 149 171 149 171 0.99
4 19 3.1e-05 0.0054 19.0 1.5 1 23 177 199 177 199 0.97
5 19 8.1e-05 0.014 17.7 0.6 2 23 206 227 205 227 0.97
6 19 7.2e-06 0.0012 21.0 2.2 1 23 233 255 233 255 0.98
7 19 4.6e-05 0.0079 18.5 0.8 1 23 261 283 261 283 0.97
8 19 1.5e-06 0.00025 23.2 1.8 1 23 289 311 289 311 0.99
9 19 0.00029 0.05 16.0 0.4 1 23 317 339 317 339 0.97
10 19 0.00015 0.025 16.9 1.1 1 23 345 367 345 367 0.98
11 19 5e-06 0.00086 21.5 0.8 1 23 373 395 373 395 0.98
12 19 1.5e-05 0.0025 20.1 2.7 1 23 401 423 401 423 0.98
13 19 2.1e-06 0.00035 22.8 2.2 1 23 429 451 429 451 0.98
14 19 8.3e-05 0.014 17.7 5.4 1 23 457 479 457 479 0.96
15 19 3.3e-07 5.7e-05 25.3 1.3 1 23 485 507 485 507 0.99
16 19 7.3e-06 0.0013 21.0 1.1 1 23 513 535 513 535 0.98
17 19 1.2e-06 0.00021 23.5 0.7 1 23 541 563 541 563 0.98
18 19 0.0006 0.1 15.0 7.1 1 23 569 591 569 591 0.98
19 19 6.2e-05 0.011 18.1 4.7 1 23 596 618 596 618 0.98

Sequence Information

Coding Sequence
ATGGAAGAggaaaataattccaattcctaTCCAAATTCCTTATGTAAAACTGAGGGAGAGGATGATGTTGCTTCTGTTTTCATAGATATCGAAGACAAGGTTTTGAAAACAGAGCTAGGCGAATATGACCCCTCAGAAACTCCTGGTCAAGAGGCTGAGGGGGAAGAAGACATGCTTACACAGTCCAACAATGAACCTGCAGATTTTGGGATAGATTTCTTAGAATCCACCAATCATGGAAAAACAGATGCAGGTCtctatacgaaaaaaaaatctttcaggtgcaaaatctgtttgaaatcattttctGGAAGTTCTTCTTTGAAAAGGCATGAGATGATTCATACTGGAGAAAAACCGTTCAAGTGCACGTTTTGTCCAATGTCGTTTGCACAAAAAGCCCATTCATTGGCACATGAGAAGGTTCACACTGGGGAAAAACCTTTCAAGTGCCAAGAATGCTCAAAAGCGTTTTCTTCGTCCTTTCATTTGATGACGCATCAGCGGATTCATACTGGCGAAAAACCGTTCACATGCAAAGTCTGTTCAAAgtcattttttgaaaactctTCCTTGAAAAGACACGAAATTATTCATACAGATGAGGAGCCGTTGAAGTGCTCGTTTTGTTCGAGATCGTTCACTAAAAGCGCAAGTTTGTTGGCACATCAGATAGTtcatacaaaacaaaaacagttCGAGTGTAAAGCGTGCTCAAAATCATTTGCTTCCCCTTTTCATTTGATGAAACATCAAAGAGTTCATACTGGAGGGAATACTTTCCAGTGCAAAATCTGTTCGAAATCGTTCTCTGCCAATTCACGTTTGTTGAGACATGAACTAGTCCATTCCGGGGAAAAACCGTTCCAGTGTCAAATCTGTTCCAAATCGTTTTCTGTCATTTCTCATTTGACGGTACATCAGAGAATCCATACTGGAGAGAAGCCGTTTCAGTGCAGAGTTTGTTTGAAATCATTCTCTGTAAATTCTCGTTTAATAAGGCACGCACTTGTTCATACAAGAGAAAAACCGTTCGAGTGCAAAATCTGTTCAAAGTCATTCGCTCTTAAAGCACATGTGATGATGCATCAAAATGTGCATACTGGAGACAAGCCTTTCCAGTGTAATTTATGTTCTAAATCTTTTTCTGGAAAGTCTCCTTTGAAAAGACATGTAATGATTCATACTGGCGACAAACCGTTCAAATGTTCGTTTTGTTCCAAGTCTTTTGCTCAGAGCACCCATTTATTGGCACACGAGAGAATTCACACCGGTGAAAAACCGTTTGAATGCAACGTATGCTTGAAATCGTTTTCCACCACTTCTCATCTGATGATTCATCAAAGAGTTCATACTGGAGAAAAACCCTTCCATTGCAAAGTATGTTCCAAATCGTTTCGCGTCAAGTCTCATTTGATGAGGCATGAAAGCGTTCACACGGGAGAAAAGCCGTTCAAATGCAAAATATGTTCAGAATCATTTTTTACTCCTTCTAACTTGATGACACATCAACGGGTTCATGTTGGAGAAGAACCGTACAAGTGCGAAGTCTGCTCGAAATCGTTTTCCGGGAGTTTTTCTTTGAAAAGGCATGAAATGATTCATACAGGGGAAAAACCATTCCAATGTTCATACTGTCCTAAATCGTTTGCTCAAAATACCGATTTATCGACTCACGAAAGGGTTCATACTGGACAAAAACCTTACGTGTGCAAATTCTGCTCGAAATCGTGTTGCTCCAGTTCCCAACTGGTAAAACACGAGAAAACTCATATAAAAAATGCGTTTCATTGTAAGATCTGTGCGAAATCTTTCCCCAAAAATAGCCATTTAGCAAAGCACGAGAAAACTCACAGTGGAAAAATAAACAATGCAGAGAGTAATCAAGAACTGCTTTCAAACCAGTCCGAGTGTGATGACACCAAAGTGTTCATAATGAGTGATGGAGTAGAAGAGTATATACGGAACGAAGACACTAAAGAGTTCATAGTGGACGACATCAAGAAAGAGTTGATTATGAGGGAAGACATGGAAGAACTCTTACTGAATTGTGACACAAAAGAGTTCATTATGAGGGATAAGTCGAAGGAATGTCCACCTAGCCAAAATGAGGTTATAATGGGCGGTGACACAAAGGTGTTAATTGTAGGAGATCAAATGGAAGATTATTTAAAGAACGAAGACACGAAAGATTTTGTAGTGGGTAAAGTCAAGGTAGAGTTTCTGGGAAATGAAGACATGGAAGTGTCCATTAAGAGCAATGAGGCAGAATAG
Protein Sequence
MEEENNSNSYPNSLCKTEGEDDVASVFIDIEDKVLKTELGEYDPSETPGQEAEGEEDMLTQSNNEPADFGIDFLESTNHGKTDAGLYTKKKSFRCKICLKSFSGSSSLKRHEMIHTGEKPFKCTFCPMSFAQKAHSLAHEKVHTGEKPFKCQECSKAFSSSFHLMTHQRIHTGEKPFTCKVCSKSFFENSSLKRHEIIHTDEEPLKCSFCSRSFTKSASLLAHQIVHTKQKQFECKACSKSFASPFHLMKHQRVHTGGNTFQCKICSKSFSANSRLLRHELVHSGEKPFQCQICSKSFSVISHLTVHQRIHTGEKPFQCRVCLKSFSVNSRLIRHALVHTREKPFECKICSKSFALKAHVMMHQNVHTGDKPFQCNLCSKSFSGKSPLKRHVMIHTGDKPFKCSFCSKSFAQSTHLLAHERIHTGEKPFECNVCLKSFSTTSHLMIHQRVHTGEKPFHCKVCSKSFRVKSHLMRHESVHTGEKPFKCKICSESFFTPSNLMTHQRVHVGEEPYKCEVCSKSFSGSFSLKRHEMIHTGEKPFQCSYCPKSFAQNTDLSTHERVHTGQKPYVCKFCSKSCCSSSQLVKHEKTHIKNAFHCKICAKSFPKNSHLAKHEKTHSGKINNAESNQELLSNQSECDDTKVFIMSDGVEEYIRNEDTKEFIVDDIKKELIMREDMEELLLNCDTKEFIMRDKSKECPPSQNEVIMGGDTKVLIVGDQMEDYLKNEDTKDFVVGKVKVEFLGNEDMEVSIKSNEAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-