Came007881.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysolina americana
Gene Symbol
-
Assembly
GCA_958502065.1
Location
OY293411.1:3039923-3043187[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.0003 0.052 15.9 1.2 1 23 89 111 89 111 0.98
2 19 1.1e-06 0.00019 23.6 2.0 2 23 117 138 116 138 0.96
3 19 0.00014 0.024 17.0 1.1 1 23 144 166 144 166 0.99
4 19 1.8e-06 0.00031 22.9 2.3 1 23 172 194 172 194 0.98
5 19 1.7e-05 0.0029 19.9 1.6 1 23 200 222 200 222 0.98
6 19 1.6e-06 0.00028 23.1 0.7 1 23 228 250 228 250 0.97
7 19 7.3e-06 0.0013 21.0 3.3 2 23 256 277 255 277 0.95
8 19 0.00021 0.037 16.4 2.9 1 23 283 305 283 305 0.99
9 19 2.2e-06 0.00038 22.6 3.2 1 23 311 333 311 333 0.98
10 19 1.5e-05 0.0026 20.0 2.3 1 23 339 361 339 361 0.98
11 19 6.5e-07 0.00011 24.3 2.9 1 23 367 389 367 389 0.98
12 19 6.8e-06 0.0012 21.1 0.2 1 23 418 440 418 440 0.98
13 19 6.2e-08 1.1e-05 27.5 1.8 1 23 446 468 446 468 0.99
14 19 3.4e-07 5.9e-05 25.2 0.5 1 23 472 494 472 494 0.99
15 19 1.1e-06 0.0002 23.6 3.5 1 23 500 522 500 522 0.99
16 19 1.3e-06 0.00022 23.4 1.6 1 23 528 550 528 550 0.99
17 19 0.00025 0.043 16.2 0.6 1 23 554 576 554 576 0.97
18 19 0.017 2.9 10.5 2.1 1 23 582 604 582 604 0.97
19 19 0.00028 0.049 16.0 3.4 1 23 610 632 610 632 0.98

Sequence Information

Coding Sequence
ATGGAAGAGAATGATTTGCCCACTTTTCCTGATACATTCTCAGTGGATTCCATTCAATGTAAAACGGAGAAAGTGGAGAGTTTTGATACTGTTTTCGTAGAGGTTGGACCCAACATTTGTAAAGAAGAACTAATCGACAGTGACAACTTTGGAATCGATGGTCAAATAAGTGAGGACCCTCTGGATACAAACGCATGGTCTTCCGATGGCCCATCAAAAGattttgaaaAGCTACAGTCAGAGTCTACCACCCGAGAAAAATCGTTCAAGTGCAAATTGTGTCCAAATTCATTCACTACTAGTTTTCTTTTGGGGAGACATGAATTAACtcatacaaatgaaaaattgactTGCGAACTctgtgaaaaatcattttctaccAAAACAAATCTGAAAAAGCATCAGAAAGCTCATACTGGAGAAAGACCATTCAAGTGCAAAGTCTGTCCAAAATCATATTATATCAATTACGATTTGAAATTGCATGAAATGACTCATGCTGGGGAAAAACTATTCAAGTGCAAAGAATGTCCTAAAGCATTTTTCACCCCTTCTCATTTGGTGAAACATGAAAAGATGCATACTGGAGATAAACCTTTCGAGTGCAAAATCTGTTCAATACCATTTCGTATAAATTCCCATTTGAGAATACATCAAAGAAGTCATACTGGAGAAAAACCGTACAAGTGCAAATTATGTCCAAAGTCATTCACTACTAGTTCTTCTTTGGGAAGACATGAAATAATTCATACAAATGAAAAATGCATTTGCGATCTctgtgaaaaatcattttcttccAAAACAAATCTGCAAAAGCATCAGAAAGCTCATACTGGAGAAAGACCATTCAAGTGCAAAGTCTGTCCAAAATCGTATTGTATCAATTACGATTTAAAAATGCATGAAATGACTCATGCTGGGGAAAAACCATTCAAGTGCAAAGAATGTCCTAAAGCATTTTTCACCCCTTCTCATTTGGTTAAACATAAAAAGATGCATACTGGAGAGAAACCTTTCGAGTGCAAAATCTGTTTAAAACCATTTCGTATAAATTCTCATTTGAGAATACATCAAAGGAGTCATACTGGAGAAAAACCGTACAAGTGCAAAATCTGTTCAAAGACCTTTTCTCAAAGTAGCCATTTGTCAGTACACGGGAGAATCCATAGCggagaaaaagtagaaaatatagaaaaacaaCCACATGTTTGCAAAACAGTCGATTGCAAAGTATGCCCCAAACCTGGAGCTTTTAGGTGTGTAGTATGCCCAAAAACATTTAGTTTCAATGCTGATTTGATAATacatcaaaaaattcatatgagggagaaacatttcaaatgcaaAGTGTGTCCCAAATCGTTTTCTAGTAATTCCGGCTTGAGATCACATCAAAGGAGTCATGCGGAGGATTTCAAATGCGAAATCTGTTCAGAACCATTCTCTACGAGTTCTTCCCTGAAAGCACATGAAAGAACTCACACAAAAGAGGAAAGATTCCAATGCTCTATTTGTTGGAAGTATTTTACTCGGAAAGATCATTTGTTGAATCATCAAAGGGTTCATACGGGggagaaatatttcaaatgcgAAGCCTGTTCCAAATCGTTTTCTAGTAAATCCGGTTTGAAGACGCATCAAAGGATCCATACGCAGGATTTCAAATGCGAAGTCTGTTCAAGATTATTTTCTAGGGTGTCTGAATTAGAGACACATCAAAGTGATCATACAGGGGAAAAACCTTTCCAATGCCAACTCTGTTTAAAGTCATTTTATGCACATTCTTATATGACAGCACACGAAAGAGCTCACACAAAAAAGGGACGATTCCAATGttctttttgtttgaaaaatttcactcgGAGATACCAATGGTTGAAACATCAGAGGGGTCATAAGGGAGAGGAGAAACCGCACGAGAGTACTCACAAAGAAAAAATCAACTCACCAGAGAATAATCAAGAACTCCCGTCTTCAGATGAGTTGATTGAAAGGGATGATATTAATGATTTAATACATTTTAATAACCCAAAAATTTTCGCAATAGGCGATAACAGTGAAGACACTGACACAGCAAGCGAAAGTACCGACGACACTGCAAGAGAAAGTACCGACGACACAGCAAGAGAAGAGTTTGTTGCAGAGGAAATCAAGCAAGAGTTCACGATAAATGAGGACACGAAAGAGTTTATTCTTTGTGATGATGGAAAGGATGTCTTCGTAATGGGGGATGGCACAAAAGAGTACAGTGTGAACGGAACAGACTTCAAAATAAGTGACGAGACAAGAGAGTTTGTAAATGACACGCTAGATGTCCCAGCAAGTAGATTCACAAACACGTTCCCACTGAGCGAAGATACGAAACAGTTCATAATGAGCAATGAgacatttgaaaattaa
Protein Sequence
MEENDLPTFPDTFSVDSIQCKTEKVESFDTVFVEVGPNICKEELIDSDNFGIDGQISEDPLDTNAWSSDGPSKDFEKLQSESTTREKSFKCKLCPNSFTTSFLLGRHELTHTNEKLTCELCEKSFSTKTNLKKHQKAHTGERPFKCKVCPKSYYINYDLKLHEMTHAGEKLFKCKECPKAFFTPSHLVKHEKMHTGDKPFECKICSIPFRINSHLRIHQRSHTGEKPYKCKLCPKSFTTSSSLGRHEIIHTNEKCICDLCEKSFSSKTNLQKHQKAHTGERPFKCKVCPKSYCINYDLKMHEMTHAGEKPFKCKECPKAFFTPSHLVKHKKMHTGEKPFECKICLKPFRINSHLRIHQRSHTGEKPYKCKICSKTFSQSSHLSVHGRIHSGEKVENIEKQPHVCKTVDCKVCPKPGAFRCVVCPKTFSFNADLIIHQKIHMREKHFKCKVCPKSFSSNSGLRSHQRSHAEDFKCEICSEPFSTSSSLKAHERTHTKEERFQCSICWKYFTRKDHLLNHQRVHTGEKYFKCEACSKSFSSKSGLKTHQRIHTQDFKCEVCSRLFSRVSELETHQSDHTGEKPFQCQLCLKSFYAHSYMTAHERAHTKKGRFQCSFCLKNFTRRYQWLKHQRGHKGEEKPHESTHKEKINSPENNQELPSSDELIERDDINDLIHFNNPKIFAIGDNSEDTDTASESTDDTARESTDDTAREEFVAEEIKQEFTINEDTKEFILCDDGKDVFVMGDGTKEYSVNGTDFKISDETREFVNDTLDVPASRFTNTFPLSEDTKQFIMSNETFEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-