Basic Information

Insect: Chrysolina americana
Gene Symbol: -
Assembly: GCA_958502065.1
Location: OY293414.1:17971803-17986052[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 32 3.2e-05 0.0055 19.0 1.9 2 23 322 343 321 343 0.97

2 32 4.2e-05 0.0073 18.6 1.7 1 23 349 371 349 371 0.99

3 32 0.043 7.4 9.2 4.7 1 23 377 399 377 399 0.97

4 32 0.0006 0.1 15.0 1.4 2 23 406 427 405 427 0.97

5 32 4.2e-05 0.0073 18.6 0.5 1 23 433 455 433 455 0.98

6 32 3.1e-06 0.00054 22.2 1.6 1 23 461 483 461 483 0.97

7 32 1.2e-05 0.0021 20.3 1.6 1 23 489 511 489 511 0.98

8 32 0.00014 0.024 17.0 2.2 1 23 517 539 517 539 0.98

9 32 0.001 0.17 14.3 4.3 1 23 545 567 545 567 0.97

10 32 0.00021 0.037 16.4 2.4 1 23 573 595 573 595 0.98

11 32 0.00048 0.083 15.3 1.0 1 20 601 620 601 621 0.97

12 32 0.00022 0.038 16.4 1.9 1 23 631 653 631 653 0.99

13 32 9.5e-06 0.0016 20.7 5.6 1 23 659 681 659 681 0.98

14 32 0.001 0.17 14.3 2.2 1 23 688 710 688 710 0.98

15 32 6.2e-07 0.00011 24.4 1.5 1 23 716 738 716 738 0.99

16 32 1.9e-05 0.0032 19.7 1.0 1 23 744 766 744 766 0.97

17 32 7.8e-06 0.0013 20.9 1.3 1 23 772 794 772 794 0.98

18 32 2.7e-05 0.0047 19.2 2.9 1 23 800 822 800 822 0.98

19 32 0.001 0.17 14.3 4.3 1 23 828 850 828 850 0.97

20 32 0.00021 0.037 16.4 2.4 1 23 856 878 856 878 0.98

21 32 0.00048 0.083 15.3 1.0 1 20 884 903 884 904 0.97

22 32 0.00022 0.038 16.4 1.9 1 23 914 936 914 936 0.99

23 32 9.5e-06 0.0016 20.7 5.6 1 23 942 964 942 964 0.98

24 32 0.001 0.17 14.3 2.2 1 23 971 993 971 993 0.98

25 32 6.2e-07 0.00011 24.4 1.5 1 23 999 1021 999 1021 0.99

26 32 9.9e-05 0.017 17.5 0.4 1 23 1027 1049 1027 1049 0.98

27 32 0.00033 0.057 15.8 2.0 1 23 1055 1077 1055 1077 0.97

28 32 0.029 5 9.7 1.6 1 23 1083 1105 1083 1105 0.97

29 32 5.2e-06 0.00089 21.5 1.5 1 23 1111 1133 1111 1133 0.98

30 32 6.3e-06 0.0011 21.2 3.6 1 23 1139 1161 1139 1161 0.99

31 32 2.8e-05 0.0049 19.2 2.7 1 23 1167 1189 1167 1189 0.99

32 32 0.0057 0.98 11.9 0.4 1 20 1195 1214 1195 1215 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	32	3.2e-05	0.0055	19.0	1.9	2	23	322	343	321	343	0.97
2	32	4.2e-05	0.0073	18.6	1.7	1	23	349	371	349	371	0.99
3	32	0.043	7.4	9.2	4.7	1	23	377	399	377	399	0.97
4	32	0.0006	0.1	15.0	1.4	2	23	406	427	405	427	0.97
5	32	4.2e-05	0.0073	18.6	0.5	1	23	433	455	433	455	0.98
6	32	3.1e-06	0.00054	22.2	1.6	1	23	461	483	461	483	0.97
7	32	1.2e-05	0.0021	20.3	1.6	1	23	489	511	489	511	0.98
8	32	0.00014	0.024	17.0	2.2	1	23	517	539	517	539	0.98
9	32	0.001	0.17	14.3	4.3	1	23	545	567	545	567	0.97
10	32	0.00021	0.037	16.4	2.4	1	23	573	595	573	595	0.98
11	32	0.00048	0.083	15.3	1.0	1	20	601	620	601	621	0.97
12	32	0.00022	0.038	16.4	1.9	1	23	631	653	631	653	0.99
13	32	9.5e-06	0.0016	20.7	5.6	1	23	659	681	659	681	0.98
14	32	0.001	0.17	14.3	2.2	1	23	688	710	688	710	0.98
15	32	6.2e-07	0.00011	24.4	1.5	1	23	716	738	716	738	0.99
16	32	1.9e-05	0.0032	19.7	1.0	1	23	744	766	744	766	0.97
17	32	7.8e-06	0.0013	20.9	1.3	1	23	772	794	772	794	0.98
18	32	2.7e-05	0.0047	19.2	2.9	1	23	800	822	800	822	0.98
19	32	0.001	0.17	14.3	4.3	1	23	828	850	828	850	0.97
20	32	0.00021	0.037	16.4	2.4	1	23	856	878	856	878	0.98
21	32	0.00048	0.083	15.3	1.0	1	20	884	903	884	904	0.97
22	32	0.00022	0.038	16.4	1.9	1	23	914	936	914	936	0.99
23	32	9.5e-06	0.0016	20.7	5.6	1	23	942	964	942	964	0.98
24	32	0.001	0.17	14.3	2.2	1	23	971	993	971	993	0.98
25	32	6.2e-07	0.00011	24.4	1.5	1	23	999	1021	999	1021	0.99
26	32	9.9e-05	0.017	17.5	0.4	1	23	1027	1049	1027	1049	0.98
27	32	0.00033	0.057	15.8	2.0	1	23	1055	1077	1055	1077	0.97
28	32	0.029	5	9.7	1.6	1	23	1083	1105	1083	1105	0.97
29	32	5.2e-06	0.00089	21.5	1.5	1	23	1111	1133	1111	1133	0.98
30	32	6.3e-06	0.0011	21.2	3.6	1	23	1139	1161	1139	1161	0.99
31	32	2.8e-05	0.0049	19.2	2.7	1	23	1167	1189	1167	1189	0.99
32	32	0.0057	0.98	11.9	0.4	1	20	1195	1214	1195	1215	0.94

Sequence Information

Coding Sequence: atggatatgttggagaatggCCCTAAGGAATTAACAATAACATTACAAGATTTTCCGTTCATTTGCCGCGTTTGTTGTTTGATGCGTGATGATATGATATTGTTGGAAGATTATTTGTTAGATCTGTTTGAGGCCACCTGCAATATCAATGTCCGATCAAGAGTCGAATATCCGAGAACTATATGCATTGGATGCATCAACGAGTTGGAAGATATATCGTTGTtcattgatatttcaaaatataatgacGTACATGTCGATACAAACATTAAATTTGAAGAAGTCACTGAATGCGCAGATTCTATTGAGAATTGGAATTCGCGAGAATCTGTCGGATCAACTCAAGGAAATGAAGAGGATATGTCTCTCCACGGATCTCAACTTTGTCGAATTTGTATGTCTCCATCAAGTAGTCTAAcgccatttgaaaataaattgcaacTGATGCAGctgtttcaaaaaatcacaaacatTGATGTGAAGGCTGAAGCCAACTCAAAAAGGAATGGCATATGCAACAAATGCATTAACCAACTGGAAAAGGTATCATTATTCATAAGTTTATCACTATGTAACAATAAAAAACTGGAAATAGTCATTGGTAGAAATGGGACGATGAAAACTGAATACTATTCAGATACAATTGATGTTGAAACATCTACGTGCGAAGGATTTGAACTTGGAAATGAAGAAATTACTGAGAatacttttggaaaaaatacatttgtatTTGAAGGCCAGAAAAAATTCGAGGTCATTGATATCAAGGAAGAAATTATCGATAATGCCCTTGCAACTTCTACTGAAGAAAAATACGAAAACGTAATGAAAATCCATTCTCAAAACATCCCTGGAGAAACACCATCTGAGTGTTTCTCAGCCACGGAAACGTTCGGAAAAGAATCTCAGTTACCACTGCACTTGCGAAACCGTGATGATATTGTGGATCTGACAACACAATTGAAATGTGACAGGTGTAAAGAAAAATTCTCGGAAAAGTCGAGTTTGCAAACTCATATGCTCACGCACACTGGAAAGAAGCCATTCAAATGTGATGGGTGCGCAAAAAATTTCACGCGGAAAATTCAATTCCAACAGCATTTGCTAACTCACACTGGAGAAAATCAGTTCAAATGTGATTGCTGCAAGAAAAGTTTTACTAGTAAGCAGATTTTGCGAAGACATTTGCTCATTCACACTGGAGAAAAACCACTCAAATGTGGTACCTGCGAAAAAAGTTTCGGACTGAAGTCGACTTTGAAACAGCATTTGTTCACTCACACAGGAGAAAATCCATTCGAATGTGGTTTCTGTGGAAAAACAttcccatttgaaaataaattgcaacGGCATTTGCTCATTCACACTGGAGAAAAGCCTTTCAAATGTGATAGATGCGAAAAAGGTTTCACTCAGAAGTCGAATTTGCAAACTCATTTGCTCTTGCACACTGGAGAAAATCCATTCAAATGTGAGAGTTGCGAAAAAACATTCCCGCGAAAAAATCAATTACAACAGCATTTGCTATCTCATACTGGAGAAAAACCATTTAAATGTAACATCTGCGAAAAAAGTTTCGGTCTGAAGAATACTTTAAAACAGCATTTGTTTACTCACACTGgagataaaatattcaaatgtaatagctgtgaaaaaagttttggtCTGAAGACGCATTTGAAAcggcatttattcattcatgctCGAGAAAAACCGTTCAAATGTGACAGCTGCACAAAAAGTTTTGTGTCGAAGAATCAATTGAAAGGGCATTTGTTTACTCACACCGGAGCAAAGCCATTCAAATGTGAATGGTGTGAAAAAAGTTACAATTTCAAGGGCAATTTGCAACAGCATTTGTTCTGTCACACGGGTgggagaaaaaaaaacttcaaatgtGATAGCTGCGAAAAAAGTTTTACTAGTAAGCAGATTTTGCAAAGACATTTGCTCACTCACACTGGAGAAAAGCCATTCAAATGTGATGAATGCGAGAAAAGATTCACTCGGACTTCGCATTTAAAACGGCATTTGTTCAGTCactctggaaaaaaaaaaccgTTCAAATGTGATAGCTGCGAAAAGAGTTTCATGCAAAAAGTTCATTGGCAAGATCATTTGCTAAGTCACACTGGAGAAAAACCATTTAAATGTGATATATGCGAAAAAAGATTTATTCGGACGTCGGATTTAAAACGGCATTTGCTCACTCACACTGGAGAGAAACCATTCCAATGTGATAGTTGCGAAAAAGGTTACACTCAGAAGTCGAATTTGCAAACTCATTTGCTCTTGCACACTGGAGAAAATCCATTCAAATGTGAGAGTTGCGAAAAAACATTCCCGCGAAAAATTCAATTACAACGGCATTTGCTATCTCATACTGGAGAAAAACCATTTAAATGTAACATCTGCGAAAAAAGTTTCAGTCTGAAGAATACTTTAAAACAGCATTTGTTTACTCACACTGgagataaaatattcaaatgtaatagctgtgaaaaaagttttggtCTGAAGACGCATTTGAAAcggcatttattcattcatgctCGAGAAAAACCGTTCAAATGTGACAGCTGCACAAAAAGTTTTGTGTCGAAGAATCAATTGAAAGGGCATTTGTTTACTCACACCGGAGCAAAGCCATTCAAATGTGAATGGTGTGAAAAAAGTTACAATTTCAAGGGCAATTTGCAACAGCATTTGTTCTGTCACACGGGTgggagaaaaaaaaacttcaaatgtGATAGCTGCGAAAAAAGTTTTACTAGTAAGCAGATTTTGCAAAGACATTTGCTCACTCACACTGGAGAAAAGCCATTCAAATGTGATGAATGCGAGAAAAGATTCACTCGGACTTCGCATTTAAAACGGCATTTGTTCAGTCactctggaaaaaaaaaaccgTTCAAATGTGATAGCTGCGAAAAGAGTTTCATGCAAAAAGTTCATTGGCAAGATCATTTGCTAAGTCACACTGGAGAAAAACCATTTAAATGTGATATATGCGAAAAAAGATTTATTCGGACGTCGGATTTAAAACGGCATTTGCTCACTCACACTGGAGAGAAACCATTCCAATGTGATAGGTGCGAAAAAGGATTCGCGGGGAAATATCAATTGAACCAGCATTTGCTTATTCACACTGGAATAAAGCCATTCAAATGTGATAGCTGCGAAAAAAGATTCAGTCTGAAGCCGGACTTGAAACGGCATTTGTTTTCTCACACTGAGGAAAAACAATTCCAATGTGATACCTGCAGTAAAAGATTTGCCtggaaaaatcaatttcaagagCATTTGTTCATTCACACTGGAGAAAAGCCATTCAAATGCGATAGCTGCGAAAAAAGATTCGTGCGCAAATCTCAATTGACACAGCATTTGCTCATTCATACTAAAGAGAAGCCATTTCAATGTGATAGCTGCGAAAAAAGTTTCACACAGAAAATTCATTTGCAAAAGCATTTGCTCACTCACTCTGCAGAAAAACCATTTCAATGCAATAGCTGCAAAAAAAGTTTCATGTATCAAATTAATTTGCAAAAGCATTTGCTCACCCACACTAGGAAAAAGCAATTCAAATGTGATGGCTGCCAAAAAAGTTTCGGCACTAAGCAGATTTTGCAGAGGCATACTGGAGAAAAGCAATCAAAACGTGttgttccTCCACCGCCAGTGATTCATTCGCCTGATAATGAAGCTATTGCCAAACCAGGATGTTTGAGTATATCAGCCATGACTACCAGTTTTTCAGACAGTCAGCAGCATATTGGTGAGAACTAA
Protein Sequence: MDMLENGPKELTITLQDFPFICRVCCLMRDDMILLEDYLLDLFEATCNINVRSRVEYPRTICIGCINELEDISLFIDISKYNDVHVDTNIKFEEVTECADSIENWNSRESVGSTQGNEEDMSLHGSQLCRICMSPSSSLTPFENKLQLMQLFQKITNIDVKAEANSKRNGICNKCINQLEKVSLFISLSLCNNKKLEIVIGRNGTMKTEYYSDTIDVETSTCEGFELGNEEITENTFGKNTFVFEGQKKFEVIDIKEEIIDNALATSTEEKYENVMKIHSQNIPGETPSECFSATETFGKESQLPLHLRNRDDIVDLTTQLKCDRCKEKFSEKSSLQTHMLTHTGKKPFKCDGCAKNFTRKIQFQQHLLTHTGENQFKCDCCKKSFTSKQILRRHLLIHTGEKPLKCGTCEKSFGLKSTLKQHLFTHTGENPFECGFCGKTFPFENKLQRHLLIHTGEKPFKCDRCEKGFTQKSNLQTHLLLHTGENPFKCESCEKTFPRKNQLQQHLLSHTGEKPFKCNICEKSFGLKNTLKQHLFTHTGDKIFKCNSCEKSFGLKTHLKRHLFIHAREKPFKCDSCTKSFVSKNQLKGHLFTHTGAKPFKCEWCEKSYNFKGNLQQHLFCHTGGRKKNFKCDSCEKSFTSKQILQRHLLTHTGEKPFKCDECEKRFTRTSHLKRHLFSHSGKKKPFKCDSCEKSFMQKVHWQDHLLSHTGEKPFKCDICEKRFIRTSDLKRHLLTHTGEKPFQCDSCEKGYTQKSNLQTHLLLHTGENPFKCESCEKTFPRKIQLQRHLLSHTGEKPFKCNICEKSFSLKNTLKQHLFTHTGDKIFKCNSCEKSFGLKTHLKRHLFIHAREKPFKCDSCTKSFVSKNQLKGHLFTHTGAKPFKCEWCEKSYNFKGNLQQHLFCHTGGRKKNFKCDSCEKSFTSKQILQRHLLTHTGEKPFKCDECEKRFTRTSHLKRHLFSHSGKKKPFKCDSCEKSFMQKVHWQDHLLSHTGEKPFKCDICEKRFIRTSDLKRHLLTHTGEKPFQCDRCEKGFAGKYQLNQHLLIHTGIKPFKCDSCEKRFSLKPDLKRHLFSHTEEKQFQCDTCSKRFAWKNQFQEHLFIHTGEKPFKCDSCEKRFVRKSQLTQHLLIHTKEKPFQCDSCEKSFTQKIHLQKHLLTHSAEKPFQCNSCKKSFMYQINLQKHLLTHTRKKQFKCDGCQKSFGTKQILQRHTGEKQSKRVVPPPPVIHSPDNEAIAKPGCLSISAMTTSFSDSQQHIGEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -