Came019879.2
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293412.1:68043644-68071662[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.011 31 6.7 1.7 9 41 160 189 156 191 0.77 2 11 0.005 14 7.8 0.6 19 34 198 210 193 218 0.79 3 11 0.19 5.2e+02 2.7 2.0 14 38 221 242 213 248 0.76 4 11 0.0059 16 7.5 1.2 14 27 271 284 263 293 0.79 5 11 0.0089 25 6.9 3.1 6 40 291 322 288 325 0.86 6 11 0.49 1.4e+03 1.4 1.6 17 28 330 341 319 351 0.73 7 11 0.0012 3.3 9.8 1.0 4 28 346 369 343 378 0.83 8 11 0.018 51 6.0 1.3 9 26 381 398 372 410 0.84 9 11 0.13 3.6e+02 3.2 2.8 11 31 412 432 402 438 0.83 10 11 4.5e-05 0.12 14.3 2.4 10 44 440 470 432 470 0.84 11 11 1.3e-05 0.035 16.1 5.5 16 44 474 499 471 499 0.88
Sequence Information
- Coding Sequence
- ATGCAAACCAGAAATATTCTCGATCAATTAAGCCTATCACTACAAATGATAATACAACTTTTGACAGACTTGGAAAATGCTATCACTTTTGCAAGGATGAATGCACTACATAATAGTATAATCAGATCCACCGAATTGAAATCAATAATCCATACGATGCTCCAAAATCATCAAGAGGAACAGTTGATATATAAGGATGATATCGACTTATCGAAATACTATGACATCATATCAGTCGATGCATATTATTCAAACTCCATAATTGTTTTCATATTGCACTTTCCTCTCCTACACCCCGAAATGTTCACACACTATCACCTATATTCAATTCCTACCAGCAATTTGACTACCATTATACCACCCGCACCATATCTGACAATGAATACTGCACTTCATCAGTACACGAACGAGCCTTGCCGAAAAATCAATCCAGCAACCAGAACATCTGTTTCAAGAACAAATATAGAACATGGACTTGAAGTGAAATCCATCAAATCAAAATACTACTGTACTCAGTGCAATAGAGTTTTAACTTCTCGGTCAGCTCTCTCCAGTCACATGAAAACCCACACTGGTGAAAGGCCGTACTCTTGTTTGTATTGTGGGAAAACATTTTCTTACATAAGCAGTCTTACGGTACACACAAGATTACATACAGGGGAAACTCCGTATGTATGTTCAATATGCAGTAAAGGTTATAGAAGTTCTACTAGTTTGAAAAAACACAAAGAAGTCAAGCACTATGATATTGAAGACAGTATGGAAGAGAGTAGTGgggttgataataaaaaaaataaaacattcaaagaatccAGCAAACAAGAGTGCAATATTTGCCATAAAGTACTGGATAAATATGGATTTGGAACCCATATGAGAATACATACcgttgagaaaaaacaattcattTGTGAGTTTTGTAATaaacaatttcagaaaaattcacaCTTAGAAAGGCATATTAGAATACACACGGgTGAACGGCCTTACAAATGTGAACTATGCAACAAGACCTTTATACAAGATGGCGACTTGAAAAGACACATTTCGATTCATTCTGGCGAAAAACAATTCCAATGTCAACATTGTGGCAAACAGTATTTCACAAAGGGAGCCTTAGCCACTCATATATCCATTCATGAAGATTCAAAGAAAACGTCAAACATCGATTGCAATGTGTGCGAGAAAACGTTCGATCAATGTTGTCATATCAAGACCGTCGGAAGCTCTCATAAGGAATGTTCTAGaaaatacttatgtacaatttgtggaaaatcatTCACAGCTAGTGGAAGTCTGAAGGTACACACCAGAATACATACAGGTGAAACACCCTTTAAATGTACATTCTGTACCAAAGGATACAACAACTCAAGCGCTTTGAAAAGACATGTGATCAGAAACCACAGTGAGGAAAAAACACACATCTGCATGATTTGCCACAAAAGTTTCCATGACTCTTCAAATTTAAAACGTCATGTGAGGAGAGTACATTCTgttgttgaaatgaaattaaattatgCTGTATCTAGAGAACCTGATAAATGA
- Protein Sequence
- MQTRNILDQLSLSLQMIIQLLTDLENAITFARMNALHNSIIRSTELKSIIHTMLQNHQEEQLIYKDDIDLSKYYDIISVDAYYSNSIIVFILHFPLLHPEMFTHYHLYSIPTSNLTTIIPPAPYLTMNTALHQYTNEPCRKINPATRTSVSRTNIEHGLEVKSIKSKYYCTQCNRVLTSRSALSSHMKTHTGERPYSCLYCGKTFSYISSLTVHTRLHTGETPYVCSICSKGYRSSTSLKKHKEVKHYDIEDSMEESSGVDNKKNKTFKESSKQECNICHKVLDKYGFGTHMRIHTVEKKQFICEFCNKQFQKNSHLERHIRIHTGERPYKCELCNKTFIQDGDLKRHISIHSGEKQFQCQHCGKQYFTKGALATHISIHEDSKKTSNIDCNVCEKTFDQCCHIKTVGSSHKECSRKYLCTICGKSFTASGSLKVHTRIHTGETPFKCTFCTKGYNNSSALKRHVIRNHSEEKTHICMICHKSFHDSSNLKRHVRRVHSVVEMKLNYAVSREPDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00328825; iTF_00328480;
- 90% Identity
- iTF_00328825; iTF_00328480;
- 80% Identity
- iTF_00328825; iTF_00328480;